Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245735.1_202017-08-10] 4,020 sequences; 24,880,192 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq3916 134 3e-29 >seq3916 Length=40521 Score = 134 bits (148), Expect = 3e-29 Identities = 149/192 (78%), Gaps = 5/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAG 271 ||||||| || |||||| | || |||||| | ||||||||| ||| ||||| |||| Sbjct 24074 GCTTCGGTAAATTTCTTAAGTCTCGATACATTTTAGGCGCGGAAGAACTAGACCAATGAG 24133 Query 272 CTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAA 331 ||||||||| ||||| ||||||||||||||||||||| |||| |||||||| | | Sbjct 24134 CTATTACGCGTTCTTTAAAGGATGGCTGCTTCCAAGCCTACCTACTGGTTGT-AATGATT 24192 Query 332 C-TCCACATCCTTTCCCACTGAG-TCACCACTTAGGGGCCTTAGCTGAT-GATCTGGGCT 388 | | ||| |||||| |||| || | | |||| | ||||||| ||| ||||||||| Sbjct 24193 CTTTCACTTCCTTTTTCACTTAGAATATTATTTAGAGACCTTAGC-GATCAATCTGGGCT 24251 Query 389 GTTTCCCTCTCG 400 |||||||| ||| Sbjct 24252 GTTTCCCTTTCG 24263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177552660480