Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq83 401 9e-110 seq2556 253 3e-65 seq3354 203 5e-50 seq2222 201 2e-49 >seq83 Length=9468 Score = 401 bits (444), Expect = 9e-110 Identities = 245/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 2728 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 2671 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2670 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 2611 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 2610 CCCGGGCCTGTCGGCCAAGGCTATAAACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 2551 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2550 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGCGGCCTAAAAG 2491 Query 241 GCCAT-CTCCCTCGAA 255 ||| | |||||| || Sbjct 2490 GCCGTAGTCCCTCTAA 2475 >seq2556 Length=210328 Score = 253 bits (280), Expect = 3e-65 Identities = 196/229 (86%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||| | |||| ||||||| | |||||||||||| | Sbjct 138305 GTACAAAGGGCAGGGACGTAATCAACACAAGCT-GATGACTTGTATTTACTAGGAATT-C 138362 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| ||||| | |||||||| |||||||| | ||||||| |||||| |||| Sbjct 138363 CTCGTTCAAGACTGAAAATTGCAACAGTCTATCCCTAGCACGATGCGCATTCAAAAGATT 138422 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||| |||||| || |||||||||| ||||||||||||||||||||| Sbjct 138423 ACCCAGACCTATCGATCAAGGTTGTATACTCGTTGAACGCATCAGTGTAGCGCGCGTGCG 138482 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 138483 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 138531 >seq3354 Length=42282 Score = 203 bits (224), Expect = 5e-50 Identities = 186/230 (81%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||| |||||||| ||||| ||||| | |||| ||||||| | |||||| ||||| | Sbjct 5081 GTACACAGGGCAGGAACGTAATCAACACAAGCT-GATGACTTGTATTTACTAAGAATT-C 5024 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| ||||| | |||||||| |||||||| ||||||||| |||| |||||| Sbjct 5023 CTCGTTCAAGACTTAAAATTGCAACAGTCTATCCCTATCACGATGCGCATTCAGAAGATT 4964 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||| | ||| |||||| || ||||||||| ||||||||||||||||||||| Sbjct 4963 ACCCAGACTTATCGATCAAGGTTGTATGCTCGTTGAACGCATCAGTGTAGCGCGCGTGCG 4904 Query 180 GCCCAGAACATC-TAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||| |||||| |||| |||||| |||||||||||||| | ||||||| Sbjct 4903 TCCCAAAACATCTTAAGAGCATCATAGACCTGTTATTGCATTCAACTTCC 4854 >seq2222 Length=488333 Score = 201 bits (222), Expect = 2e-49 Identities = 185/229 (81%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||| |||||||| ||||| ||||| | |||| ||||||| | |||||| |||| | Sbjct 210800 GTACACAGGGCAGG-ACGTAATCAACACAAGCT-GATGACTTGTATTTACTAAGAAT--C 210745 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| ||||| | |||||||| |||||||| ||||||||| |||| |||||| Sbjct 210744 CTCGTTCAAGACTTAAAATTGCAACAGTCTATCCCTATCACGATGCGCATTCAGAAGATT 210685 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||| |||||| || |||||||||| |||||||||||||||| |||| Sbjct 210684 ACCCAGACCTATCGATCAAGGTTGTATACTCGTTGAACGCATCAGTGTAGCGCGCATGCG 210625 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 | || ||||||| || |||||| |||||||||||||| || ||||||| Sbjct 210624 TCTCAAAACATCTTAGAGCATCATAGACCTGTTATTGCATCCAACTTCC 210576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751970750725