Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq83 233 4e-59 seq2556 228 1e-57 seq3354 150 3e-34 seq2222 141 2e-31 >seq83 Length=9468 Score = 233 bits (258), Expect = 4e-59 Identities = 203/248 (82%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 1835 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 1894 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||||| ||||| | ||| || |||||||| Sbjct 1895 GGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 1953 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 1954 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 2013 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 2014 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 2072 Query 311 GTTAGGGG 318 ||| |||| Sbjct 2073 GTTGGGGG 2080 >seq2556 Length=210328 Score = 228 bits (252), Expect = 1e-57 Identities = 203/250 (81%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 139208 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 139149 Query 130 TGGAATAATAGAATAGGACG-TGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 |||||||||| ||| ||| || | |||||||||||||||| | ||| |||||| Sbjct 139148 TGGAATAATAAGATACGACCCTGGTGGTCTATTTTGTTGGTTTGCAC-ACCAAGGTAATG 139090 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||||||| ||| |||||| | |||| | |||||||||||||||||| ||| Sbjct 139089 ATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTAGATCG 139030 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 | ||||| | || |||||||| || ||||||||||||||||||||||| |||||| Sbjct 139029 CTGGAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGA 138971 Query 309 AAGTTAGGGG 318 |||||||||| Sbjct 138970 AAGTTAGGGG 138961 >seq3354 Length=42282 Score = 150 bits (166), Expect = 3e-34 Identities = 187/249 (75%), Gaps = 13/249 (5%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| ||||||||||||||| || ||||||||| |||| || |||||||| ||| Sbjct 4204 TTTACTGTGAAAAAATTAGAGTATTTAAAGCAGGCGTTTGTTCATTTAAATACATTTGCA 4263 Query 130 TGGAATAAT-AGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAAT 187 ||||||||| ||| | | || || |||| | |||||||| | || | ||||| Sbjct 4264 TGGAATAATAAGATAATTATATGAGGGTCTA-TGTGTTGGTT----GTACACAAGGTAAT 4318 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||||||||||| |||||| | |||| | |||||||| ||||||||| ||| Sbjct 4319 GATTAATAGGGATAGTTGGGGGTATTCATATTTCAGCGTCAGAGG-GAAATTCTTAGATC 4377 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 | ||||| |||| ||||| | | |||||| |||||||||||||| | | || Sbjct 4378 GCTGGAAGATAAACTTAGGCGAATACACTAACCAAGAATGTTTTCATTAATTA-ACATCG 4436 Query 308 AAAGTTAGG 316 ||||||||| Sbjct 4437 AAAGTTAGG 4445 >seq2222 Length=488333 Score = 141 bits (156), Expect = 2e-31 Identities = 185/249 (74%), Gaps = 13/249 (5%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| ||||||||||||||| || ||||||||| |||| || ||||||||| ||| Sbjct 209925 TTTACTGTGAAAAAATTAGAGTATTTAAAGCAGGCGTTTGTTCATTTGAATACATTTGCA 209984 Query 130 TGGAATAAT-AGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAAT 187 ||||||||| ||| | | || || |||| |||||||||| | || | | ||| Sbjct 209985 TGGAATAATAAGATAATTATATGAGGGTCTA-TTTGTTGGTT----GTACACAAGGGAAT 210039 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 ||||||||||||| || |||||| | |||| | |||||||| ||||||||| ||| Sbjct 210040 GATTAATAGGGATTGTTGGGGGTATTCATATTTCAGCGTCAGAGG-GAAATTCTTAGATC 210098 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 | ||||| | || || || | | |||||| |||||||||||||| | | || Sbjct 210099 GCTGGAAGATAAGCTTAGGCAAATACACTAACCAAGAATGTTTTCATTAATTA-AAATCG 210157 Query 308 AAAGTTAGG 316 ||||||||| Sbjct 210158 AAAGTTAGG 210166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915163254720