Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq83 242 2e-61 seq2556 230 1e-57 seq2222 125 3e-26 seq3354 114 5e-23 >seq83 Length=9468 Score = 242 bits (268), Expect = 2e-61 Identities = 227/283 (80%), Gaps = 7/283 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||| | | Sbjct 4171 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCGAGTA 4230 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCG-TGAGGG-TGCACCATCG 520 ||||||| | ||||| ||| ||| || ||||| ||| |||||| |||||| || Sbjct 4231 AACCCGTAAGGCGTAAGGAAGCTGATTGG---TGGGATCCCCCTGAGGGGTGCACCGCCG 4287 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| | |||| | | || || || |||| ||||||| |||| ||||||||||||| Sbjct 4288 ACCGACCTTGATCTTCTGTGAAGGGTTCGAGTGTGAGCATACCTGTCGGGACCCGAAAGA 4347 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| Sbjct 4348 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGA 4407 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 4408 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 4450 Score = 158 bits (174), Expect = 5e-36 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| ||| |||| | || || || Sbjct 3786 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTGAATTCCGTCCAAGGC 3845 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| |||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 3846 TAAATACGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 3905 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 3906 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 3950 >seq2556 Length=210328 Score = 230 bits (254), Expect = 1e-57 Identities = 239/316 (76%), Gaps = 38/316 (12%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| |||||||||||||||||||||||| | ||| |||||| |||||| | Sbjct 136520 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTGTTAGGGTGTGGA 136461 Query 464 AACCCGTGCGCGTAATGAAAGTGAACGG----------------AGGTGGGAACCCGTGA 507 ||||| ||||| ||||||||| || || |||| |||| || Sbjct 136460 AACCCCAGCGCGAAATGAAAGTAAAGGGCAGCGCAAGCTGTCTGAGGTAGGAAATGCTGC 136401 Query 508 GG---------------GTG-CACCATCGACCGATCCTGATGTCTTCG----GATGGATT 547 || ||| ||| ||||||||||| ||| ||||| || |||| Sbjct 136400 GGTCTTCGGTCTGCGGCGTGGCACTATCGACCGATCATGAAC-CTTCGTGGTGAAAGATT 136342 Query 548 TGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||||| ||||| | |||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 136341 TGAGTTTGAGCACATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAA 136282 Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 ||||| ||||||||||||||| ||||| |||| ||||| ||||||||||||||||| || Sbjct 136281 GCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAAC 136222 Query 668 TTGGGTATAGGGGCGA 683 |||||||| ||||||| Sbjct 136221 TTGGGTATGGGGGCGA 136206 Score = 167 bits (184), Expect = 1e-38 Identities = 133/160 (83%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| ||||||||| | || | || |||||||| | ||||||||||||| Sbjct 137068 GAGTCGCGTTGTTTGAGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 137009 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||||||| ||| || || Sbjct 137008 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTCTGAAA 136949 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| || ||||||| || || Sbjct 136948 AGAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGTAACCG 136909 >seq2222 Length=488333 Score = 125 bits (138), Expect = 3e-26 Identities = 122/156 (78%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| || ||||||||| || | || || ||||||| ||||||||||||| Sbjct 212033 GAGTCGCATTGCTTAAGAATGCAGCGTAAAGTAGGTGGCAAATTTCATCTAAAGCTAAAT 212092 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||| ||| || ||| || Sbjct 212093 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGATAAGAAC-TTGAAA 212151 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGA 195 ||| ||||||| | || ||||| || || ||| || Sbjct 212152 AGATAGTTAAAGAATACCTGAAACTGCTGCAAGAGA 212187 >seq3354 Length=42282 Score = 114 bits (126), Expect = 5e-23 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| | || || || |||||| || | || || ||||| | ||||||| ||||| Sbjct 6318 GAGTCGCGCTGCTTTAGATTGCAGCGTAAAGTAGGTGGCAAATTCCATCTAAAGATAAAT 6377 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||| ||| ||||| || Sbjct 6378 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGATAAGAACTTTAAAA 6437 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGA 195 ||| ||||||| | || ||||| || || ||| || Sbjct 6438 AGATAGTTAAAGAATACCTGAAACTGCTGCAAGAGA 6473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079913878250