Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2556 304 2e-80 seq83 300 3e-79 seq3354 226 5e-57 seq2222 215 8e-54 >seq2556 Length=210328 Score = 304 bits (336), Expect = 2e-80 Identities = 219/250 (88%), Gaps = 7/250 (3%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 138464 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 138523 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAG-CCAGCCACCAACCATAG 132 ||||||| |||| | || | |||| ||||| ||||||||| ||| | || |||| | Sbjct 138524 CAACTTCCTTTGGTTTGATTACCCAAAAGTCCGTCTAAGAAGTCCACACGCCTACCAAAA 138583 Query 133 TCGAT----GGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 | | | || ||| |||||| | ||||||||||||||| |||||||||||||||| Sbjct 138584 TTGGTAAACGGAACTAGTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACA 138643 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 138644 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTC 138703 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 138704 TCAATCTGTC 138713 >seq83 Length=9468 Score = 300 bits (332), Expect = 3e-79 Identities = 223/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2584 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 2525 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | || ||| | ||||||||||||||||| ||| Sbjct 2524 CCTGTTATTGCCTCAAACTTCCGCGGCCTAAAAGGCCGTAGTCCCTCTAAGAAGCTGGCC 2465 Query 122 ACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | || ||| || |||| |||||||| | ||||||||||||||| ||||||| Sbjct 2464 GCGAAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 2405 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2404 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 2345 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 2344 AAAGAGCTCTCARTCTGTC 2326 >seq3354 Length=42282 Score = 226 bits (250), Expect = 5e-57 Identities = 211/260 (81%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCT-AAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| ||||||| ||| |||||| |||||||||||||| | Sbjct 4922 TCAGTGTAGCGCGCGTGCGTCCCAAAACATCTTAAGAGCATCATAGACCTGTTATTGCAT 4863 Query 75 CAAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCCA---GCCACCAACCA 129 ||||||| |||| | | | |||| |||| ||||| | ||| ||| || | | Sbjct 4862 TCAACTTCCTTTGGTTTAATTACCCAA-AGTCTATCTAAAAGTCCACACGCCTCCCAAAA 4804 Query 130 TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | || | || ||| |||||| | ||||||||||||||| ||||||||||||||||| Sbjct 4803 TTGTAAACGGAACTAGTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACAA 4744 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC-AAGAAAGAGCTA 248 |||||| ||||||||||||||||||||||||||||| ||||| |||| || |||||||| Sbjct 4743 ATCACTTCACCAACTAAGAACGGCCATGCACCACCA-CCATAAAATCAAAAAAAGAGCTC 4685 Query 249 TCAATCTGTC-CTCCCTCGA 267 |||||||||| ||| || || Sbjct 4684 TCAATCTGTCACTCTCTGGA 4665 >seq2222 Length=488333 Score = 215 bits (238), Expect = 8e-54 Identities = 198/249 (80%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||| |||| | || ||||||| || |||||| |||||||||||||| || Sbjct 210643 TCAGTGTAGCGCGCATGCGTCTCAAAACATCTTAGAGCATCATAGACCTGTTATTGCATC 210584 Query 76 AAACTTCCATTGGCT--GGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 ||||||| |||| | | | |||| |||| ||||| | ||| | || ||| | | Sbjct 210583 CAACTTCCTTTGGTTTAGTTACCCAAAAGTCTATCTAAAAGTCCACACGCCTCCCAAAAT 210524 Query 134 CGAT----GGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | | || ||| |||||| | ||||||||||||||| ||||||||| ||||||| Sbjct 210523 TGGTAAACGGAACTAGTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAATCAGACAA 210464 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 |||||| || ||||||||| |||||||||||||||||||||| ||||| |||||||| | Sbjct 210463 ATCACTTCATCAACTAAGATCGGCCATGCACCACCACCCATAATATCAAAAAAGAGCTCT 210404 Query 250 CAATCTGTC 258 ||||||||| Sbjct 210403 CAATCTGTC 210395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796769008215