Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq147 109 1e-21 seq2167 95.1 3e-17 seq58 87.8 4e-15 seq347 84.2 5e-14 >seq147 Length=123988 Score = 109 bits (120), Expect = 1e-21 Identities = 96/117 (82%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| ||| ||| |||| |||||||| |||||||| |||||||||| ||||||||||||| Sbjct 44459 TCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCT 44401 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCA 140 |||| | ||| ||| |||||||||||| ||| |||| |||||||| || ||| Sbjct 44400 GCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCA 44345 >seq2167 Length=55589 Score = 95.1 bits (104), Expect = 3e-17 Identities = 89/111 (80%), Gaps = 3/111 (3%) Strand=Plus/Plus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| ||| ||| |||| ||| |||| |||||||| |||||||||| | ||||||||||| Sbjct 42262 TCACTCACTCGGTATTG-CTGAATCAAGCTTTCGCTCATTGTCCAAAAATCCCCACTGCT 42320 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 |||| | ||| ||| | |||||||||| ||| |||| ||||||||| Sbjct 42321 GCCT--TTAAAAAGTTTGGGCAGTGTCTCAGTCCCAATGTGGCTGATCATC 42369 >seq58 Length=133778 Score = 87.8 bits (96), Expect = 4e-15 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 20 TCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCAC 79 ||| |||| ||| ||| |||| |||||||| |||||||| |||||| || ||||||||| Sbjct 47116 TCTATCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTTATTGTCTAAAATTCCCCAC 47058 Query 80 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTC 139 |||||||| | ||| | |||||||||||| || |||| | |||||| || | Sbjct 47057 TGCTGCCT-TTACAAAAGTTTAAGCCGTGTCTCAGTCTCAATGTGGCAGATCATTCTTTT 46999 Query 140 AGACCAGTTACGGATCGTCGCCTTGGT 166 | ||| || ||| | |||||||| Sbjct 46998 GAATCAGCTAAAGATAATAGCCTTGGT 46972 >seq347 Length=109820 Score = 84.2 bits (92), Expect = 5e-14 Identities = 88/113 (78%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| | | | | || |||| ||| ||| |||| |||||||| |||||||| | Sbjct 82848 CTTTACAACCTAATTAGCCTCCATCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTC 82906 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCA 113 ||||||||| ||||||||||||||||| | ||| ||| |||||||||| Sbjct 82907 ATTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCA 82958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071956959200