Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq2556 84.2 3e-14 seq83 75.2 1e-11 >seq2556 Length=210328 Score = 84.2 bits (92), Expect = 3e-14 Identities = 84/106 (79%), Gaps = 11/106 (10%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCAC----GTCCTATTCTATTATTCCATGCTAATGTATTC- 64 ||||||||||||||| || ||| ||| ||| ||||||||||||||||||||||| Sbjct 139106 AAACCAACAAAATAG--AC-CACCAGGGTCGTATCTTATTATTCCATGCTAATGTATTCA 139162 Query 65 ---GGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | || | ||||||||| |||||||||||||| ||| ||||| Sbjct 139163 AATGAGCAAACGCCTGCTTTAAACACTCTAATTTTTTCACAGTAAA 139208 >seq83 Length=9468 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 ||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 1931 CCAACGTAATAGGACCGAAA-TCCTATAATGTTATCCCATGCTAATGTATACAGAGCGTA 1873 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 1872 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 1835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595176849510