Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq2556 131 2e-28 seq83 127 2e-27 seq3354 89.7 5e-16 seq2222 89.7 5e-16 >seq2556 Length=210328 Score = 131 bits (144), Expect = 2e-28 Identities = 139/179 (78%), Gaps = 7/179 (4%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACCA 68 |||||| |||||||||||||| ||| ||||||||| ||||||| |||||||||| || Sbjct 139208 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 139149 Query 69 TGGAATAATAGAATAGGA-CGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| ||| || | || | |||||||||| ||||| | ||| ||||| Sbjct 139148 TGGAATAATAAGATACGACCCTGGTGGTCTATTTTGTTGGTTTGCA-CACC-AAGGTAAT 139091 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| |||| ||| ||| |||||| | |||| | |||| ||||||||||||| ||| Sbjct 139090 GATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTAGAT 139032 >seq83 Length=9468 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 1835 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 1894 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| || || | ||| || ||||||| Sbjct 1895 GGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGA-GTAATGA 1952 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 1953 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 2012 Query 190 T 190 | Sbjct 2013 T 2013 >seq3354 Length=42282 Score = 89.7 bits (98), Expect = 5e-16 Identities = 130/179 (73%), Gaps = 11/179 (6%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACCA 68 |||||| |||||||||||||| || ||||||||| |||| || |||||||| || Sbjct 4204 TTTACTGTGAAAAAATTAGAGTATTTAAAGCAGGCGTTTGTTCATTTAAATACATTTGCA 4263 Query 69 TGGAATAAT-AGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 ||||||||| ||| | | || || |||| | ||| |||| | || ||||| Sbjct 4264 TGGAATAATAAGATAATTATATGAGGGTCTA-TGTGTTGGTT----GTACACAAGGTAAT 4318 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| |||| ||||||| |||||| | |||| | |||| ||| ||||||||| ||| Sbjct 4319 GATTAATAGGGATAGTTGGGGGTATTCATATTTCAGCGTCAGAGG-GAAATTCTTAGAT 4376 >seq2222 Length=488333 Score = 89.7 bits (98), Expect = 5e-16 Identities = 130/179 (73%), Gaps = 11/179 (6%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACCA 68 |||||| |||||||||||||| || ||||||||| |||| || ||||||||| || Sbjct 209925 TTTACTGTGAAAAAATTAGAGTATTTAAAGCAGGCGTTTGTTCATTTGAATACATTTGCA 209984 Query 69 TGGAATAAT-AGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 ||||||||| ||| | | || || |||| ||||| |||| | || | ||| Sbjct 209985 TGGAATAATAAGATAATTATATGAGGGTCTA-TTTGTTGGTT----GTACACAAGGGAAT 210039 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| |||| |||| || |||||| | |||| | |||| ||| ||||||||| ||| Sbjct 210040 GATTAATAGGGATTGTTGGGGGTATTCATATTTCAGCGTCAGAGG-GAAATTCTTAGAT 210097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511980085600