Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq147 98.7 2e-18 seq2167 91.5 4e-16 seq347 73.4 1e-10 >seq147 Length=123988 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/124 (78%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 18 GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCC 77 ||| ||| ||| ||| ||| || |||| |||| |||| ||| |||||| ||| |||||| Sbjct 44467 GGCATTCATCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCC 44408 Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137 ||||||||||| | ||| ||| |||||||||||| ||| |||||||| |||| || Sbjct 44407 CACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCT 44349 Query 138 CTCA 141 ||| Sbjct 44348 TTCA 44345 >seq2167 Length=55589 Score = 91.5 bits (100), Expect = 4e-16 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 19 GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCC 78 |||||| ||| ||| ||| || |||| |||| |||| ||| |||||| ||| | ||||| Sbjct 42255 GCCTTCATCACTCACTCGGTATTGCTGAATCAAGCTTTCGCTCATTGTCCAAAAATCCCC 42314 Query 79 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATC 135 |||||||||| | ||| ||| | |||||||||| ||| |||||||| ||||| Sbjct 42315 ACTGCTGCCT--TTAAAAAGTTTGGGCAGTGTCTCAGTCCCAATGTGGCTGATCATC 42369 >seq347 Length=109820 Score = 73.4 bits (80), Expect = 1e-10 Identities = 85/112 (76%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | |||| | ||| ||| ||| || |||| |||| |||| ||| || Sbjct 82848 CTTTACAACCTAATTAGCCTCCATCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCA 82907 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCA 114 |||| ||| ||||||||||||||||| | ||| ||| |||||||||| Sbjct 82908 TTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCA 82958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222350920640