Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq347 168 2e-39 seq2167 116 1e-23 seq147 113 1e-22 seq58 87.8 5e-15 seq2401 84.2 7e-14 >seq347 Length=109820 Score = 168 bits (186), Expect = 2e-39 Identities = 194/255 (76%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 248 TGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAA 307 |||||||||| ||||||| | ||||||||||||||||| ||| |||||| || || Sbjct 82958 TGAGACACGGCCCAAACTTTTTTAA-AGGCAGCAGTGGGGAATTTTGGACAATGAGCGAA 82900 Query 308 AGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC-CTTCGGGTCGTAAAGCTCTGTCC 366 ||| |||| |||||| ||| ||||| |||| |||| | ||| ||||||||| || Sbjct 82899 AGCTTGATCCAGCAATACCGAGTGAGTGATGGAGGCTAATTAGGTTGTAAAGCTCATTCG 82840 Query 367 TCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTAC--GTGCCAGCAG 424 | | ||| | |||||| |||||| | | |||| |||||||| ||| |||||||||| Sbjct 82839 TTAGGGAGGGGAATGACAGTACTTAAAAAAGAAGTTCCGGCTAA-TACCTGTGCCAGCAG 82781 Query 425 CCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTA 484 |||||||||||| || || ||| |||| |||||| | | |||||||| || ||| Sbjct 82780 TCGCGGTAATACGGGAGGAGCGAGCATTATTCGGAATGA-TTATGCGTAAAGAGTTTGTA 82722 Query 485 GGTGGTTTCTTAAGT 499 |||||||| || ||| Sbjct 82721 GGTGGTTTTTTGAGT 82707 >seq2167 Length=55589 Score = 116 bits (128), Expect = 1e-23 Identities = 123/160 (77%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 229 TGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGA 288 ||||| |||||||||| |||||||||| | ||||||| | ||||||||||||||| Sbjct 42367 TGATCAGCCACATTGGGACTGAGACACTGCCCAAACTTTTTAA--AGGCAGCAGTGGGGA 42310 Query 289 ATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC-CTTC 347 | ||| |||||| || ||||| |||| |||||| ||| ||||| ||||||||| | Sbjct 42309 TTTTTGGACAATGAGCGAAAGCTTGATTCAGCAATACCGAGTGAGTGATGAAGGCTAATT 42250 Query 348 GGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTA 387 | | |||||| ||| || | ||||| | |||||| ||| Sbjct 42249 AGTTTGTAAAGATCTTTCATTAAGGAGGTAAATGACAGTA 42210 >seq147 Length=123988 Score = 113 bits (124), Expect = 1e-22 Identities = 100/124 (81%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||| || ||||| |||||||||| |||||||||||| ||||||| | ||||||| Sbjct 44345 TGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAA-AGGCAGC 44403 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||||||||| ||| |||||| || ||||| |||| |||||| ||| ||||| |||||| Sbjct 44404 AGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAATACCGAGTGAGTGATGAA 44463 Query 341 GGCC 344 ||| Sbjct 44464 TGCC 44467 >seq58 Length=133778 Score = 87.8 bits (96), Expect = 5e-15 Identities = 110/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 194 TACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGAC 253 ||||||||| | ||| |||| || | || ||||| ||||||||| |||||||| Sbjct 46971 TACCAAGGCTATTATCTTTAGCTGATTCAAAAGAATGATCTGCCACATTGAGACTGAGAC 47030 Query 254 ACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTG 313 |||| ||||| | ||||||||||||||||| || ||||| || ||||| || Sbjct 47031 ACGGCTTAAACTTTTGTAA-AGGCAGCAGTGGGGAATTTTAGACAATAAGCGAAAGCTTG 47089 Query 314 ATGCAGCAACGCCGCGTGAGCGATGAAGGC 343 || |||||| ||| ||||| ||| |||| Sbjct 47090 ATCCAGCAATACCGAGTGAGTGATAGAGGC 47119 >seq2401 Length=52027 Score = 84.2 bits (92), Expect = 7e-14 Identities = 109/147 (74%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 246 ACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCA 305 |||||||||||| | |||| | ||||||||||||||||| ||| |||||| ||| Sbjct 13989 ACTGAGACACGGCTCGAACTTTTTTAA-AGGCAGCAGTGGGGAAT-TTGGACAATGAGCA 14046 Query 306 AAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC-CTTCGGGTCGTAAAGCTCTGT 364 |||| | || |||||| || | ||||| |||| |||| | ||| ||||| |||| | Sbjct 14047 AAAGGTTAATCCAGCAATGCAGAGTGAGTGATGGAGGCTAATTAGGTTGTAAAACTCTAT 14106 Query 365 CCTCAAGGAAGATAATGACGGTACTTG 391 | || || || |||||| ||| ||| Sbjct 14107 CACTAAAGAGGAAAATGACAGTAATTG 14133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497539871360