Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq147 109 1e-21 seq347 84.2 5e-14 >seq147 Length=123988 Score = 109 bits (120), Expect = 1e-21 Identities = 120/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 188 GGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGC 247 |||||| ||| || || | | |||| ||| |||| ||| ||| | ||| ||||||||| Sbjct 44065 GGAATTTCTATTGAAGTGATAAAATACGTTGATAATAGAAGGGAGACCTAAGGCGAAGGC 44124 Query 248 GGCTTGCTGGACTGTA-ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAG 306 | |||| | || |||||||||||| ||||||| |||| ||| ||| ||||||| Sbjct 44125 AATTATCTGGG-TCTATACTGACACTGAGAAACGAAAGCTTGGGTAGCGAACGGGATTAG 44183 Query 307 ATACCCTGGTAGTCCACGCCGTAAACGATGAATACTA 343 | |||| ||||||||| || ||||||||||| | ||| Sbjct 44184 AGACCCCGGTAGTCCATGCTGTAAACGATGAGTGCTA 44220 >seq347 Length=109820 Score = 84.2 bits (92), Expect = 5e-14 Identities = 89/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGG 58 ||||| | | |||| |||||||| ||| |||||||||| |||||||||||| || Sbjct 82820 TACTTAAAAAAGAAGTTCCGGCTAA-TACCTGTGCCAGCAGTCGCGGTAATACGGGAGGA 82762 Query 59 GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 || ||| |||| |||||| | | |||||||| || ||||||||||| || ||| Sbjct 82761 GCGAGCATTATTCGGAATGATTATGCGTAAAGAGTTTGTAGGTGGTTTTTTGAGT 82707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203151691520