Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq83 309 6e-82 seq2556 237 3e-60 seq3354 163 5e-38 seq2222 158 2e-36 >seq83 Length=9468 Score = 309 bits (342), Expect = 6e-82 Identities = 262/318 (82%), Gaps = 16/318 (5%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG------CTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | || | || |||| || ||| Sbjct 2417 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTTCGCGG----CCAGCT 2472 Query 74 TCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| |||| | | |||| |||||||||||||||||||||||||||| Sbjct 2473 TCTTAGAGGGACTA-CGGCCTTTTAGGCCGC-GGAAGTTTGAGGCAATAACAGGTCTGTG 2530 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| | ||||||||| || Sbjct 2531 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTTATAG 2590 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||| Sbjct 2591 CCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTG 2649 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| | Sbjct 2650 CAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACT 2709 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 2710 ACGTCCCTGCCCTTTGTA 2727 >seq2556 Length=210328 Score = 237 bits (262), Expect = 3e-60 Identities = 209/260 (80%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||| ||||| | || | ||| || | ||||||| |||||||||||||||||| Sbjct 138565 CTTCTTAGACGGACTTTTGGGTAATCAAACCAAAGGAAGTTGGAGGCAATAACAGGTCTG 138506 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 138505 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCGTTCAACGAGTATAC 138446 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||||| || |||||||||||||||| | || ||||||| |||||||| | Sbjct 138445 AACCTTGATCGATAGGTCTGGGTAATCTTTTGAATGCGCATCGTGCTAGGGATAGACTGT 138386 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| | |||| |||||||||| |||||||| | ||||||||| | ||||| Sbjct 138385 TGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAATACAAGTCATCAGCTTGTGTTGA 138326 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 138325 TTACGTCCCTGCCCTTTGTA 138306 >seq3354 Length=42282 Score = 163 bits (180), Expect = 5e-38 Identities = 178/235 (76%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 95 AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA-GATGTTCTGGGCCG 153 || || | ||||||| | |||||||||||||| |||||| |||| |||||| |||| || Sbjct 4846 AAACCAAAGGAAGTTGAATGCAATAACAGGTCTATGATGCTCTTAAGATGTTTTGGGACG 4905 Query 154 CACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAA 213 ||||||||||||||||| ||||||| | |||||| || | |||||||||| Sbjct 4906 CACGCGCGCTACACTGATGCGTTCAACGAGCATACAACCTTGATCGATAAGTCTGGGTAA 4965 Query 214 TCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGA 273 |||| | || ||||| | |||||||| |||||||| | |||| |||||||| Sbjct 4966 TCTTCTGAATGCGCATCGTGATAGGGATAGACTGTTGCAATTTTAAGTCTTGAACGAGGA 5025 Query 274 ATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || | |||||| | ||||||||| | ||||||||||| |||||||| |||| Sbjct 5026 ATTCTTAGTAAATACAAGTCATCAGCTTGTGTTGATTACGTTCCTGCCCTGTGTA 5080 >seq2222 Length=488333 Score = 158 bits (174), Expect = 2e-36 Identities = 177/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 95 AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGC 154 || || | ||||||| || |||||||||||||| |||||| || ||||||| || | ||| Sbjct 210568 AAACCAAAGGAAGTTGGATGCAATAACAGGTCTATGATGCTCTAAGATGTTTTGAGACGC 210627 Query 155 ACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAAT 214 | |||||||||||||| |||||||| | |||||| || ||||||||||||| Sbjct 210628 ATGCGCGCTACACTGATGCGTTCAACGAGTATACAACCTTGATCGATAGGTCTGGGTAAT 210687 Query 215 CTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAA 274 ||| | || ||||| | |||||||| |||||||| | |||| ||||||| | Sbjct 210688 CTTCTGAATGCGCATCGTGATAGGGATAGACTGTTGCAATTTTAAGTCTTGAACGAGG-A 210746 Query 275 TGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | |||||| | ||||||||| | ||||||||||| |||||||| |||| Sbjct 210747 TTCTTAGTAAATACAAGTCATCAGCTTGTGTTGATTACGT-CCTGCCCTGTGTA 210799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947161969920