Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq83 704 0.0 seq2556 601 1e-169 seq3222 75.2 4e-11 >seq83 Length=9468 Score = 704 bits (780), Expect = 0.0 Identities = 479/532 (90%), Gaps = 7/532 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 6228 CTTCTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 6169 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 6168 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 6109 Query 127 GGCCCGCGAAGGA--CCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 |||| || ||| | |||| ||| ||| | || | ||| || ||||| |||| Sbjct 6108 GGCCTGC-AAGCAAGCCTTGGGTCCAAAAAGAGGGGCAGTGCC--CCGCTTCCGATTCAC 6052 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || ||||||||| |||| ||| ||||||||||||||||| |||| |||||||||| Sbjct 6051 GGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCTTT-CGGCTCCCAC 5993 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5992 TTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 5933 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 5932 TTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAG 5873 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5872 ACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 5813 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5812 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 5753 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 5752 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTAAACATC 5701 >seq2556 Length=210328 Score = 601 bits (666), Expect = 1e-169 Identities = 462/540 (86%), Gaps = 17/540 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 134344 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATT 134403 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||| ||||| || || | || Sbjct 134404 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTC 134463 Query 127 GGCCCGCG---AAGGAC---CTTAACGCCAGAAAATGGTCGGT---GAAGAC---CAGTT 174 |||| ||| | |||| | |||| ||| ||| |||| | ||| | Sbjct 134464 A-CCCGAACAAAAGCTCAGGCTTACAACTAGAAC-TGGGCGGCCGCGAAGCCAGCCAGAT 134521 Query 175 CCGCT-TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA 233 | | |||| | ||||||||| ||| | || ||||||||||||||| || | || Sbjct 134522 GCTATATCATGGTATAAGTAAAACAACATTGAGAGTAGTGGTATTTCACGGACGGCAAAG 134581 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 | ||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||| Sbjct 134582 C--CTCCCACTTATTCTACACCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAGCT 134639 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 ||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||| Sbjct 134640 CAACAGGGTCTTCTTTCCCCGCTGATTATTCCAAGCCCATTCCCTTGGCTGTGGGTTCGC 134699 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 134700 TAGACAGTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAG 134759 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 134760 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 134819 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 134820 TGGTTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 134879 >seq3222 Length=200438 Score = 75.2 bits (82), Expect = 4e-11 Identities = 62/75 (83%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 208 GTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATT 267 ||||||||||||||| || | || || ||||||||||| |||||||| ||||||||| Sbjct 167876 GTAGTGGTATTTCACGGACGGCAAAGCG--TCCCACTTATTATACACCTCCCAAGTCATT 167933 Query 268 TCACAAAGTCGGACT 282 | |||| ||| |||| Sbjct 167934 TTACAACGTCAGACT 167948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635134346720