Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq83 603 3e-170 seq2556 437 3e-120 seq3001 268 3e-69 seq2334 109 2e-21 >seq83 Length=9468 Score = 603 bits (668), Expect = 3e-170 Identities = 447/513 (87%), Gaps = 13/513 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| || | |||||| |||| |||||||||||||||||| Sbjct 1612 GTACTCATTCCAATTACCAGACTCATA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 1554 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1553 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1494 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 1493 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 1434 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 1433 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 1374 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | | |||| |||||| ||| |||||| |||||||| | | ||| | | || | Sbjct 1373 CGATGGCCGTGCGATCCGTCGAGTTATCATGAATCATC--GCAGCAACGGGCAGAGCCCG 1316 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 1315 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 1256 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| ||||| || ||| |||||| |||| |||||||| Sbjct 1255 AGCTCTAGAATTACTACGGTTATCCGAGTAGT-AGATACCATCAAACAAACTATAACTGA 1197 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | | ||| | ||||||| |||||||||||| Sbjct 1196 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTTGTTCATACTTACACATGCATGGCT 1137 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 1136 TAATCTTTGAGACAAGCATATGACTACTGGCAG 1104 >seq2556 Length=210328 Score = 437 bits (484), Expect = 3e-120 Identities = 430/555 (77%), Gaps = 60/555 (11%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 || |||||||||||| | ||| |||| ||||| | || ||||||||||||||||| Sbjct 139443 GTTCTCATTCCAATTGCCCGACTCAAA-GAGCCAGAGCATTGTTATTTATTGTCACTACC 139501 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| || || |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 139502 TCCCTGTATCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 139561 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||| ||||||||||||||||||| |||||||||||||||||||||||| | ||||||| Sbjct 139562 TTCTAAGGCTCCCTCTCCGGAATCAAACCCTAATTCCCCGTTACCCGTTAACGCCATGGT 139621 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||||| |||||||||||| ||| |||||||||||||| | | ||| ||||| || Sbjct 139622 AGGCCAATATCCTACCATC-TAAGCTGATAGGGCAGAAACTCAATCGAATTATCGC--GC 139678 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA----AGGAGCCCCGAAG--GG 293 ||| ||||| ||| ||||||||||| ||| || | ||||| ||| | Sbjct 139679 GAAAG----CGCGATCCGTACAGTTATTATGATTCAACACAATACCAGCCCGAAAGACTG 139734 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCCG------------AAGTCG------- 334 |||| |||| ||||||||||| | ||| |||| ||| || Sbjct 139735 AATTGG-TTTTAATCTAATAAATGCTACCCGTCCGACAAGCATCATAAAGACGATTCAAA 139793 Query 335 -----------------------GGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACG 370 |||| |||| ||||||||||||||||||||||| ||| Sbjct 139794 GAACCACCTCTAGACAAGCAGTTGGGTATTTATGCATGTATTAGCTCTAGAATTACTACG 139853 Query 371 GTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCA 430 |||||||| |||||||||||||||| | || || ||||||||| |||||||||||||||| Sbjct 139854 GTTATCCAAGTAGTAAGGTACTATCGATTAGACTATAACTGATATAATGAGCCATTCGCA 139913 Query 431 GTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 489 ||||||| ||| | | || ||||||||||||||||||||||||||||||||||||||| Sbjct 139914 GTTTCACAGTACAATAGTGTTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCG 139973 Query 490 TATGACTACTGGCAG 504 ||||||||||||||| Sbjct 139974 TATGACTACTGGCAG 139988 >seq3001 Length=45425 Score = 268 bits (296), Expect = 3e-69 Identities = 306/415 (74%), Gaps = 58/415 (14%) Strand=Plus/Minus Query 140 AATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCG 199 |||| |||||||||||||||||||||||| | ||||||||||||| |||||||||||| Sbjct 9452 AATCAAACCCTAATTCCCCGTTACCCGTTAACGCCATGGTAGGCCAATATCCTACCATCT 9393 Query 200 AAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTT 259 || | |||||||||||||| | | ||| ||||| | || || ||||| ||| Sbjct 9392 AA-GCTGATAGGGCAGAAACTCAATCGAATTATCGCGCG---AAAGC---GCGATCCGTA 9340 Query 260 AAGTTATTATGAATCACCA----AGGAGCCCCGAAGGGCG--TTGGTTTTTTATCTAATA 313 ||||||||||| ||| || | ||||| ||| | |||||||| |||||||| Sbjct 9339 CAGTTATTATGATTCAACACAATACCAGCCCGAAAGACTGAATTGGTTTTA-ATCTAATA 9281 Query 314 AATACACCCCTTCCGA------------AGTCG--------------------------- 334 ||| | ||| ||||| || || Sbjct 9280 AATGCTACCCGTCCGACAAGCATCATAAAGACGATTCAAAGAACCACCTCTAGACAAGCA 9221 Query 335 ---GGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA 390 |||| ||| ||||||||||||||||||||| | ||||||||||| ||||||||||| Sbjct 9220 GTTGGGTATTTRTGCATGTATTAGCTCTAGAATTRCTACGGTTATCCAAGTAGTAAGGTA 9161 Query 391 CTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGC 449 ||||| | || || ||||||||| ||||||||||||||||||||||| ||| | | || Sbjct 9160 CTATCGATTAGACTATAACTGATATAATGAGCCATTCGCAGTTTCACAGTACAATAGTGT 9101 Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 9100 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 9046 Score = 158 bits (174), Expect = 4e-36 Identities = 123/144 (85%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 || |||||||||||| | ||| |||| ||||| | | || ||||||||||||||||| Sbjct 10156 GTTCTCATTCCAATTGCCCGACTCAAA-GAGCCATAGCATTGTTATTTATTGTCACTACC 10098 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| || | | |||||||||||| |||||||||||||||||||| ||||| ||||||| Sbjct 10097 TCCCTGTATTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGAATGTGTTAGCCGT 10038 Query 120 TTCTCAGGCTCCCTCTCCGGAATC 143 |||| ||||||||||||||||||| Sbjct 10037 TTCTAAGGCTCCCTCTCCGGAATC 10014 >seq2334 Length=215027 Score = 109 bits (120), Expect = 2e-21 Identities = 85/100 (85%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG-ATTGCTTATACTTAGACATG 464 || ||||| ||||||| |||||||||||||| ||| | | || ||||||||||||||| Sbjct 36882 TATCTGATATAATGAGTTATTCGCAGTTTCACAGTACAATAGTGTTTATACTTAGACATG 36823 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| ||||| |||||||||||||| ||||| ||||| ||| Sbjct 36822 CATTGCTTAGTCTTTGAGACAAGCGTATGAATACTGACAG 36783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510339357440