Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20tabacina_20[genbank_20GCA_5F002099245.1_202017-04-18] 4,015 sequences; 63,065,868 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1101 241 1e-58 seq446 194 1e-44 seq3828 185 7e-42 >seq1101 Length=81374 Score = 241 bits (266), Expect = 1e-58 Identities = 595/888 (67%), Gaps = 25/888 (3%) Strand=Plus/Plus Query 61053 TCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGA 61112 ||||||||| | || ||||| || | | || | |||| |||||||| ||||| || Sbjct 6990 TCGTTTCGTGCTTTTTCCCATTCAGGAGAACGACGTGTGGCAAATGTACAAGAAGGCCGA 7049 Query 61113 AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCG 61172 ||||| |||||||| | |||||| |||| || | | || | || |||||||| Sbjct 7050 GGCTTCGTTCTGGACAGCCGAGGAGCTCGACCTGGTCCACGATCTCAAGGACTGGGACAA 7109 Query 61173 TTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGA 61232 | || | ||||| |||||| | || |||||| | || || ||||| || || Sbjct 7110 ACTCACGGACAATGAACGCCATTTCGTGAAGCATGTGCTTGCCTTTTTTGCAGCCAGCGA 7169 Query 61233 CGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGG 61288 || || || || || || | || ||| ||| || | || |||||||| | | Sbjct 7170 TGGCATTGTGAACGAAAACCTCGCCAT--GAAT-TTTAGCA-ACGAAGTGCAAGTACCTG 7225 Query 61289 AGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACA 61348 | || || || |||||||| || |||||||| || |||||| | ||||||||| | || Sbjct 7226 AAGCTCGCTGCTTCTACGGGTTTCAGATTGCGATTGAGAATATTCACTCGGAGGTCTATT 7285 Query 61349 GTGTTCTCATCGATACGTACATCAGGGA-GCGGGCG-GAACGTGAACGAT-TGTTCAATG 61405 | || || ||||| || |||| | | || || | ||| | || || || | || Sbjct 7286 CGCTGCTTATTGATACATATATCAAGAATGCTGGAGAGAAGG---ACCATCTGCTGCGTG 7342 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGA-TCACC 61464 |||| || |||||||| || || |||||| ||||||| |||| ||| | ||| Sbjct 7343 CCATTGATACGATACCATGTGTCAAAAAGAAAGCCAATTGGGCACTCAAGTGGTGTGACC 7402 Query 61465 AGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTT 61524 | | | | | | | || || | |||| ||||| ||| ||||| | || Sbjct 7403 CGCG-AGTGTCATCGTACGCAGAGCGTCTATTGGCGTTTGCCTCGGTGGAGGGCATTTTC 7461 Query 61525 TTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTG 61584 ||| ||||| || | | ||||||||| ||||||||||||| |||||||| ||||| Sbjct 7462 TTCTCCGGATCCTTCTGCTCCATCTTTTGGCTGAAGAAACGTGGTCTTATGCCTGGTCTC 7521 Query 61585 ACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TGTTT- 61642 | |||| || ||| | || || || ||||||||||| || ||||| ||| | Sbjct 7522 AGCTTCTCAAACGAGCTAATTAGTCGTGATGAGGGCATGCACACGGACTTTGCTTGTCTC 7581 Query 61643 -TGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTT 61701 || ||||| | | ||||| ||| | ||||| || ||| |||||| || Sbjct 7582 ATG-TATTC-----CAAACTGGTTAATAAGTTGCCGGAGAGTCGGGTGCACGAGATTATT 7635 Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761 || || || || || || || || || ||| || |||| | | || ||| ||||| Sbjct 7636 CGGGATGCTGTGACAATTGAGCACGAGTTTGTGCGTGACTCACTCCCTGTCGAGCTCATT 7695 Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821 |||||||| | | ||| |||| ||||| ||||| || || || |||||| | || | Sbjct 7696 GGCATGAACTCGGCACTCATGTGTCAGTACATTGAGTTCGTGGCTGACCGTTTACTGTAC 7755 Query 61822 GATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATT 61881 ||||| | ||| ||| | | || |||||||| || | ||||| |||||| Sbjct 7756 TCACTGGGTGTTGCCAAGATTTATCACGCCAAGAACCCATTCGACTGGATGGATATGATT 7815 Query 61882 TCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929 ||||| | |||||||| || |||||||| || ||||| ||||| ||| Sbjct 7816 TCGCTACAAGGCAAGACCAACTTTTTCGAAAAGCGTGTGGGCGAGTAT 7863 >seq446 Length=286769 Score = 194 bits (214), Expect = 1e-44 Identities = 555/839 (66%), Gaps = 25/839 (3%) Strand=Plus/Plus Query 61053 TCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGA 61112 ||||||||| | || ||||| || | | || | |||| |||||||| ||||| || Sbjct 150420 TCGTTTCGTGCTTTTTCCCATTCAGGAGAACGACGTGTGGCAAATGTACAAGAAGGCCGA 150479 Query 61113 AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCG 61172 ||||| |||||||| | |||||| |||| || | | || | || |||||||| Sbjct 150480 GGCTTCGTTCTGGACAGCCGAGGAGCTCGACCTGGTCCACGATCTCAAGGACTGGGACAA 150539 Query 61173 TTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGA 61232 | || | ||||| |||||| | || |||||| | || || ||||| || || Sbjct 150540 ACTCACGGACAATGAACGCCATTTCGTGAAGCATGTGCTTGCCTTTTTTGCAGCCAGCGA 150599 Query 61233 CGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGG 61288 || || || || || || | || ||| ||| || | || |||||||| | | Sbjct 150600 TGGCATTGTGAACGAAAACCTCGCCAT--GAAT-TTTAGCA-AYGAAGTGCAAGTACCTG 150655 Query 61289 AGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACA 61348 | || || || |||||||| || |||||||| || |||||| | ||||||||| | || Sbjct 150656 AAGCTCGCTGCTTCTACGGGTTTCAGATTGCGATTGAGAATATTCACTCGGAGGTCTATT 150715 Query 61349 GTGTTCTCATCGATACGTACATCAGGGA-GCGGGCG-GAACGTGAACGAT-TGTTCAATG 61405 | || || ||||| || |||| | | || || | ||| | || || || | || Sbjct 150716 CGCTGCTTATTGATACATATATCAAGAATGCTGGAGAGAAGG---ACCATCTGCTGCGTG 150772 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGA-TCACC 61464 |||| || |||||||| || || |||||| ||||||| |||| ||| | ||| Sbjct 150773 CCATTGATACGATACCATGTGTCAAAAAGAAAGCCAATTGGGCACTCAAGTGGTGTGACC 150832 Query 61465 AGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTT 61524 | | | | | | | || || | |||| ||||| ||| ||||| | || Sbjct 150833 CGCG-AGTGTCATCGTACGCAGAGCGTCTATTGGCGTTTGCCTCGGTGGAGGGCATTTTC 150891 Query 61525 TTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTG 61584 ||| ||||| || | | ||||||||| ||||||||||||| |||||||| ||||| Sbjct 150892 TTCTCCGGATCCTTCTGCTCCATCTTTTGGCTGAAGAAACGTGGTCTTATGCCTGGTCTC 150951 Query 61585 ACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TGTTT- 61642 | |||| || ||| | || || || ||||||||||| || ||||| ||| | Sbjct 150952 AGCTTCTCAAACGAGCTAATTAGTCGTGATGAGGGCATGCACACGGACTTTGCTTGTCTC 151011 Query 61643 -TGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTT 61701 || ||||| | | ||||| ||| | ||||| || ||| |||||| || Sbjct 151012 ATG-TATTC-----CAAACTGGTTAATAAGTTGCCGGAGAGTCGGGTGCACGAGATTATT 151065 Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761 || || || || || || || || || ||| || |||| | | || ||| ||||| Sbjct 151066 CGGGATGCTGTGACAATYGAGCACGAGTTTGTGCGTGACTCACTCCCTGTCGAGCTCATT 151125 Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821 |||||||| | | ||| |||| ||||| ||||| || || || |||||| | || | Sbjct 151126 GGCATGAACTCGGCACTCATGTGTCAGTACATTGAGTTCGTGGCTGACCGTTTACTGTAC 151185 Query 61822 GATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGAT 61880 ||||| | ||| ||| | | || |||||||| || | ||||| ||||| Sbjct 151186 TCACTGGGTGTTGCCAAGATTTATCACGCCAAGAACCCATTCGACTGGATGGATATGAT 151244 >seq3828 Length=141882 Score = 185 bits (204), Expect = 7e-42 Identities = 931/1461 (64%), Gaps = 53/1461 (4%) Strand=Plus/Plus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 |||||||| || ||||| || || ||||||||| || ||||| |||| | | ||| Sbjct 94006 TAGTACATACCCGTCTTTAGCCCCTTCTTCCAAGCATAAAAGTGCATGGATG-TGAGTTT 94064 Query 65183 GCATAAT--TCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGAC 65240 | | || |||| ||||| | || || || | |||||||||||| ||| ||| || Sbjct 94065 AC-TGATCGTCGGGTCGGCGATGTGAATGTTAAGCGACTGACTCTGGCAGATATAAGCAC 94123 Query 65241 CACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT--ATCTCCCAGACGGTCTTGTA 65298 |||| || || | || || | | ||| | | | | || ||||| || |||||||| Sbjct 94124 CACGGTCAGCCGACAGATCTA--ACACGGATTTCTGCTTGATTTCCCACACTGTCTTGTA 94181 Query 65299 CAGGCGACGT-ACCTCAATTGGAAT-CTCCTCAATGTCCTGGACTGAACCACGA-CGTGC 65355 | | | || | ||||| || ||| | || || || ||| | ||| | Sbjct 94182 CTT-CTCYTTGACATGGTCCGGAATGCTTTTCACCTTT-TGCACAGARCCATGGTCGTTC 94239 Query 65356 AATAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAA 65415 | || | | ||||| | | | ||| | ||||| |||||| || | || | || Sbjct 94240 AGTA-TCTGGTTACGGACCTCGGGCGTCCAGATACCCAGATCGATCAGCTCTTTCATCAG 94298 Query 65416 GTGACGATTGATGAC--TTG-GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGA 65472 || || ||| | || | | |||||| || | || ||||| || || ||||| || Sbjct 94299 GT-AC--TTGTTCACGATCGTGAACTCACCAGCAAGCACACGTCGATTGTACATGTTCGA 94355 Query 65473 CGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCAT 65532 |||| || || | ||| || |||| || || || |||||||| || ||||| ||||| Sbjct 94356 CGTGTATGGCTCGATGGACTCGTTGTTACCAAGGATCTGGGCAGTCGAAGCAGTAGGCAT 94415 Query 65533 GGGAGCGACCAACAATGAGTTTCGCAATCCGTTC---ATTTCAATGTTGTGACGCAATTC 65589 |||||| || | ||| ||||| || | |||| | || || | || | || | Sbjct 94416 GGGAGCCACTAGCAAAGAGTTGCGGATACCGTGCTTAATCACATTCTTTTT---CAGAGC 94472 Query 65590 GTCCCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGT 65649 | |||||| ||| | | | || || || |||||| || || | | | Sbjct 94473 GACCCAGTCCCAAA--GACCAGAGGACGGAATG-ACACCCCACATGTCAAACTGGAAGAT 94529 Query 65650 TCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTG 65709 || | || ||||| || || | || | |||||| ||| |||||||||| | Sbjct 94530 ACCCTTGCTAGCCGGGGAGCCCTGAAATGTTTCGTACGGGCCCAGTTCCTTGGCAATCTC 94589 Query 65710 ACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACG 65769 | ||||| | | ||| |||| |||||||| ||||| || |||||||| Sbjct 94590 CATGGATGTCTCCATCGAAGCATAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACG 94649 Query 65770 TGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAAC 65829 |||| ||||| || ||| | ||| || | || | ||||||||||| ||||| Sbjct 94650 AGCCTGTTCGCTTTCAAACGCGTAATTCATAAGAATGAATGCATCGGCCAGACCCTGAAC 94709 Query 65830 TCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTC-GCCTCAGGTACAGGGTAGT 65888 |||||||| | || || || |||| ||| || ||| | ||||| | || ||||||| Sbjct 94710 ACCAATACCCACAGGGCGGTGGCGCATATTAGA-CGTTTGAGCCTCTGCAACCGGGTAGT 94768 Query 65889 AATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATT 65948 | |||| ||||||| || | ||| || || ||||| | | | || || | Sbjct 94769 AGTTGACGTCGATAACCTTGTTAAGATTACGGGTGACCACCTTC--GTCACATCATACAG 94826 Query 65949 GTTC--GAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAG 66006 ||| | | ||||| || | ||| | ||||| || || || Sbjct 94827 CTTCTTGTAGTCAAA---------------GGCA---CCGTTTTCAACAAATTTTGGTAG 94868 Query 66007 GGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTC 66066 || | ||| || | |||||| ||||| | || | || | |||||||| | | || Sbjct 94869 AGCCACAGACGCCAAGTTGCACACAGCCACTTCATTCGGCGACGTATACTCCATCACCTC 94928 Query 66067 GGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCA 66126 ||||| |||||| | || || ||||| | |||||| || || ||| || || Sbjct 94929 ACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGGTTGGACTTACGGTTAAC 94988 Query 66127 TGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTG 66186 || ||||| | | ||| |||| ||| ||||||| || | || | |||| Sbjct 94989 CGCGTCCTTAAAAAGCATAAACGGTACGCCCGTCTCAATCTGCGCATCTAAGATGCTAAA 95048 Query 66187 CCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTA 66246 ||| || |||| || | || || | |||| |||||||| | ||| | Sbjct 95049 CCATAGCTGCTGTGCATTAATTGTTTTGCGAGCACGTCCTTCCCGTTCGTACTTTTCAAA 95108 Query 66247 GAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACAT 66306 || ||||| || ||||| ||| | ||| || | || |||||| | Sbjct 95109 AAGCGCCTCGAACTCGTCTCCCCAGCACTCGTAAAGAGCAGGTGCTTCGTTTGGACAAAA 95168 Query 66307 CAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGC 66366 | ||| | |||| ||| || || |||||| | |||||| | ||| ||||| Sbjct 95169 TAAACTCCACTTGCCATTGGCTTCCACCCGTTTCATAAACAAATCAGGAACCCAAAGGGC 95228 Query 66367 GTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAA 66426 |||||| | || || ||||| || |||| | ||||| || || || | ||| || || Sbjct 95229 GTAGAATAAGTCACGCGCTCGGTGTAGCTCATTACCGTGGTTCTTACGAAGGTCCAGAAA 95288 Query 66427 CTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCC 66486 |||||| | |||||||||||| || |||| ||| | || || || || | ||||| || Sbjct 95289 CTCAAACACGTCGGCATGCCACGGCTCCAAGTATACAGCAAAAGACCCTTTGCGTTTACC 95348 Query 66487 GCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCC 66546 ||||||||||| ||||| || || | ||| || ||||||||||| || | || ||| Sbjct 95349 TCCACCTTGGTCCACGTATCGGGCTGTGTCGTTAAACACACGCAACATAGGAATGATCCC 95408 Query 66547 GTTAGATTTGCCATTGGTGCC 66567 |||||| ||||| ||||| Sbjct 95409 GTTAGAGGACCCATTAGTGCC 95429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397548545879600