Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq133 111 2e-22 >seq133 Length=36881 Score = 111 bits (122), Expect = 2e-22 Identities = 175/247 (71%), Gaps = 8/247 (3%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||||| ||||| ||||||||||| ||||| || |||||||| ||||| | || ||| Sbjct 28375 TTATC-TTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGA 28432 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||| ||||||| ||||||||||| ||| ||||| | || ||| | | | || Sbjct 28433 GTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCTACTT-ATTTAAA 28491 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 | | | | || | || || |||||||||||| | ||||||||||| | Sbjct 28492 AATTTAAATAAATAG-----GTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGT 28546 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||| | | ||||| | | | ||||||| | ||| |||| ||||||||||||||| Sbjct 28547 TCCTTCAATATAGTTCTCTCATTCACCTTAGTCTACTCGACCTATCCACCTGTGTCGGTT 28606 Query 242 TACGGTA 248 || |||| Sbjct 28607 TAGGGTA 28613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694375103373