Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1455 407 4e-111 seq2072 91.5 4e-16 >seq1455 Length=10490 Score = 407 bits (450), Expect = 4e-111 Identities = 346/419 (83%), Gaps = 18/419 (4%) Strand=Plus/Minus Query 97 CCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCC 156 ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 10490 CCTTCCTTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCGGAATCAAACCCTAATTCC 10431 Query 157 CCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 |||||||||||| || |||||||||||| |||||||||||| |||| |||||||||||| Sbjct 10430 CCGTTACCCGTTAATGCCATGGTAGGCCCATATCCTACCATCCAAAGCTGATAGGGCAGA 10371 Query 217 AATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCAC 276 || | | || ||||| || ||| ||||| || ||||||||||| ||| Sbjct 10370 AACTCAATCGATTTATCGC--GCAAAAG----CGCGATCCGCACAGTTATTATGACTCAA 10317 Query 277 CA-AGGAGC--CCCGAAG--GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGA-- 329 || | | | ||||||| || |||| ||| ||||||||||| | ||| |||| Sbjct 10316 CACAATACCAGCCCGAAGACTGCATTGG-TTTCAATCTAATAAATGCTACCCGCCCGACA 10258 Query 330 ---AGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAA 386 ||| ||| ||| ||||||||||||||||||||||| |||| |||||| ||||||| Sbjct 10257 AGCAGTTGGGTATTTATGCATGTATTAGCTCTAGAATTACTACGGGTATCCAAGTAGTAA 10198 Query 387 GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGA 445 ||||||||| | || || ||||||||| ||||||||||||||||||||||| ||| | | Sbjct 10197 GGTACTATCGAGTAGACTATAACTGATATAATGAGCCATTCGCAGTTTCACAGTACAAAA 10138 Query 446 TTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 10137 TTGTTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 10079 Score = 181 bits (200), Expect = 3e-43 Identities = 133/152 (88%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 || |||||||||||| | ||| | || ||||| | || ||||||||||||||||| Sbjct 151 GTTCTCATTCCAATTGCCCGACTCGAA-GAGCCAGAGCATTGTTATTTATTGTCACTACC 93 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 92 TCCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 33 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTA 151 |||| ||||||||||||||||||| ||||||| Sbjct 32 TTCTAAGGCTCCCTCTCCGGAATCAAACCCTA 1 >seq2072 Length=4000 Score = 91.5 bits (100), Expect = 4e-16 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 97 CCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTA 151 ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 1 CCTTCCTTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCGGAATCAAACCCTA 55 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510344100096