Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq663 280 1e-70 seq130 255 5e-63 >seq663 Length=23881 Score = 280 bits (310), Expect = 1e-70 Identities = 1097/1694 (65%), Gaps = 63/1694 (4%) Strand=Plus/Plus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 ||||||||||| |||||||| || ||| || ||||| ||||| || | | | || Sbjct 21285 TAGTACATGCCCGTCTTGAGTCCCTTCTTCCAGGCGTAGAAGTGCATGGACG-TGAGCTT 21343 Query 65183 GCATAAT--TCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGAC 65240 || | || |||| ||||| | || || || | |||||||||||| ||||| | Sbjct 21344 GC-TGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCGC 21402 Query 65241 CACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT-ATCTCCCAGACGGTCTTGTAC 65299 |||| || || | || ||| | | ||| || | |||||||| || ||||||||| Sbjct 21403 CACGGTCGGCCGACAGGTCCAGCACT-GACTTCTGCTTGATCTCCCACACCGTCTTGTAC 21461 Query 65300 AGGCGACGT-ACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTGCAA 65357 | | | || | || || ||| | | ||| || ||||||| | ||| || Sbjct 21462 TT-CTCCTTGACGTTGTCCGGGATGGCCTTCACCTTCTGCACGGAACCACCGTCGTTCAG 21520 Query 65358 TAATGCGATTACGCA-TCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAG 65416 ||| |||| || | | | | | ||| | ||||| ||||| || | | | || | Sbjct 21521 -AATCTGATTGCGAACTTCAGGC-GTCCAGATGCCCAACTCGATCAGCTCCTTCATCAGG 21578 Query 65417 TGACGATTGATGAC--TTG-GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGAC 65473 | || ||| | || | | ||||||||| | || ||||||||| || ||||||||| Sbjct 21579 T-AC--TTGTTAACGATCGTGAACTCGCCAGCAAGCACACGACGGTTGTACATGTTGGAC 21635 Query 65474 GTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATG 65533 ||| ||| || | || || ||||||| | || || |||||||| || || |||||| Sbjct 21636 GTGTAGGGCTCGATAGACTCGTTGTTGCCCAAGATCTGAGCAGTAGAAGCCGTCGGCATG 21695 Query 65534 GGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCC 65593 || || |||| || ||||| || | |||| | | | || | || | || Sbjct 21696 GGGGCCACCAGCAGCGAGTTGCGAAGACCGTGCTTGATCACATTCTCCTTCAGCGCAGCC 21755 Query 65594 CAGTTCCACAT--CGGTTTATCGTC-GACATCCACGGGCCACATATCCTGTTGCAGGGTT 65650 || | ||| | ||| | | |||| || ||||| || || | Sbjct 21756 CAATCCCAAAGTCCGGACGAAGGAGTGACACCC------CACATGTCGAACTGGAAAACA 21809 Query 65651 CCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGA 65710 || | |||||||| || || ||||| | ||||| ||| ||||||||||| | Sbjct 21810 CCCTTGCTGGCCGGCGAGCCCTGGAAAGTCTCGTAGGGGCCCAACTCCTTGGCAATCTC- 21868 Query 65711 CAGCTG-GTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACG 65769 || | ||||| | | || | || || |||||||| ||| || | ||||| Sbjct 21869 CATCGACGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTCAACTCACG 21928 Query 65770 TGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAA 65828 ||||| |||||||| ||| | || ||| |||| || | || ||||||||||||| Sbjct 21929 TGCCTGCTCGCTCTCAAACG-CGTAGTTCATAAGGATGAACGCATCAGCCAGACCTTGAA 21987 Query 65829 CTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGT 65888 | |||||||| | |||||| || |||| || || | |||||| || ||||||| Sbjct 21988 CACCAATACCCACGGGACGGTGGCGCATGTTCGACTTGCGCGCCTCTACGACCGGGTAGT 22047 Query 65889 AATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCG--CAA 65946 | |||| ||||| | |||| ||||| |||||||| | | ||| || ||| Sbjct 22048 AGTTGACGTCGATCACCTTGTTCAGGTTGCGCGTCACCACCTTG--GTTACTTCATACAA 22105 Query 65947 TTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAG 66006 || | | ||| | || ||| | |||||||| | || || Sbjct 22106 CCTTTTGTA--------GTTGAACACA----------CCGTCCTCCACAAACATCGGCAG 22147 Query 66007 GGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTC 66066 || | || || | ||||| ||||| | ||| ||||||| || ||||| | | ||| Sbjct 22148 TGCCACCGACGCCAAATTGCACACAGCCACCTCATCAGGAGAAGTGTACTCCATCACTTC 22207 Query 66067 GGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCA 66126 ||||| || ||| |||| || |||||||| || || || || |||||| || Sbjct 22208 ACAGCACAAGTTGCTGGAGCGGATCGTGCCCAAGTTTTGCTGGTTCGACTTGCGGTTAGC 22267 Query 66127 TGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTG 66186 ||| |||||||||| |||| | ||| || ||||||| || | |||| |||||| Sbjct 22268 TGCGTCCTTGTACAGCATGAATGGAACACCCGTCTCAATCTGCGCGTCAAGGATGGCAAA 22327 Query 66187 CCAAAGAGCGCGTGCCTTCACCGTA---CGTAC-CGCCCTACCTTTGCGTTCGTAATGTT 66242 ||| || |||| || | ||| || | || || |||| ||||| | | Sbjct 22328 CCACAGTTGCTGTGCATTGATCGTCTTGCGAGCACGTCCCTCCTTC----TCGTACTTCT 22383 Query 66243 CGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGAC 66302 ||||||| || || |||||||| ||| | || | ||| | | || | Sbjct 22384 CGTAGAGCGTCTCAAACTCGTCACCCCAGCACTCGTAGAGTCCAGGAGCTTCATTGGGGC 22443 Query 66303 ACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGA 66362 | | || ||| | |||| ||| ||||| ||| || ||||| || | ||| | Sbjct 22444 AGAACAAACTCCACTTGCCATTGGCTTCCACACGCTTCATGAACAGATCGGGGACCCAAA 22503 Query 66363 GGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGA 66422 |||||||||| | ||||| || || ||| ||| | ||||| || ||||||||||| | Sbjct 22504 GGGCGTAGAACAAGTCGCGCGCCCGATGCAACTCGTTACCGTGGTTCTTGCGCAAGTCCA 22563 Query 66423 GGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTT 66482 ||||||||| | || || ||||| || |||||||| || ||||| || ||| | |||| Sbjct 22564 AGAACTCAAACACATCTGCGTGCCAAGGCTCCAGGTAAATAGCGAAAGACCCCTTGCGTT 22623 Query 66483 TGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGA 66542 | || || || ||||| ||||||||||| || ||| || || |||||||| || | || Sbjct 22624 TACCTCCGCCCTGGTCCACGTAGCGAGCAGTATCGTTAAACACCCGCAACATGGGGATGA 22683 Query 66543 GCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGA 66601 || || || ||| |||||||| ||| | | | | || || || || | ||| Sbjct 22684 TGCCATTGGACGAGCCGTTGGTGCC-TCGGATGTAGCTGTTGGTGGCACGGATGTTGTGC 22742 Query 66602 ACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGG 66661 | | | | ||||| || || ||| ||| |||||| ||||| | || ||| | Sbjct 22743 ATACTAATGCCAATTCCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTCAGTGTGTCG 22802 Query 66662 AATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGT 66721 | ||||| ||||| ||||| ||| || | ||| | | |||| || | |||||| Sbjct 22803 TAAATGCCCTCAATCGAGTCGTCCTGCATAGCCAGCAAGAAGCACGAGGACAATTGGGGA 22862 Query 66722 TTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATG 66781 || ||| | || |||||| ||||| || |||||||| ||| | | | |||||| Sbjct 22863 CGTGGCGTGCCAGCGTTGAAGAGCGTGGGCGTGGCGTGCGTGAAGAACTTCTGGGACATG 22922 Query 66782 TAATTGTACGTCTC 66795 | ||||||||| Sbjct 22923 AGCTCGTACGTCTC 22936 >seq130 Length=37012 Score = 255 bits (282), Expect = 5e-63 Identities = 596/886 (67%), Gaps = 25/886 (3%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| | |||||||| || | | || | |||| |||||||| ||||| || Sbjct 16098 CGCTTCGTGCTCTTCCCCATTCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCCGAG 16039 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTT-GTCCAAAGACATGAATGACTGGGAGCG 61172 |||||||||||||||| |||||| | ||| | || || ||| | || ||||||| | Sbjct 16038 GCTTCCTTCTGGACGGCCGAGGAGCTGGATCTCGTGCAC-GACCTCAAGGACTGGGTGAA 15980 Query 61173 TTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGA 61232 | || | || | || ||||| || || ||| |||| |||||||| || || Sbjct 15979 CCTCACGGACAACGAGCGCCACTTCATCAAGCACGTGCTGGCCTTCTTTGCTGCCAGTGA 15920 Query 61233 CGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGG 61288 ||||| ||||| ||||| || || |||| ||| | |||||||||||| | | Sbjct 15919 TGGTATAGTCAACGAGAACTTGGCCAT--GAAC--TTCAGCAACGAGGTGCAAGTGCCTG 15864 Query 61289 AGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACA 61348 |||| || || ||||||||||||||||| ||||| ||||| ||||||||||| ||||| Sbjct 15863 AGGCTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACT 15804 Query 61349 GTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA--CGATTGTTCAATGC 61406 | || || || |||||||||| ||| | || | || | || | ||| Sbjct 15803 CGCTGCTTATTGACACGTACATCAAGGACATTGTCGA--GAAAACCCACCTGCTGCGTGC 15746 Query 61407 CATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACCA 61465 ||| ||||| || ||| || || |||||| | ||||| |||| ||| | ||| Sbjct 15745 CATTGAGACTATCCCGTGTGTCCAGAAGAAAGCCAACTGGGCGCTCAAGTGGTGCGACCC 15686 Query 61466 GTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525 | | | | | | ||||| ||||||| ||||| | || |||||| | || | Sbjct 15685 GCGC-GTGTCGTCCTACCCGGAACGGCTGCTGGCCTTTGCTGCAGTGGAGGGTATCTTCT 15627 Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585 || || || || | | ||||| ||| | ||||| ||||| || ||||| ||||| | Sbjct 15626 TCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTAA 15567 Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG-CTG--TTT 61642 |||| || ||| | || || |||||||||||||| || || | ||| | Sbjct 15566 GCTTCTCGAACGAGCTCATCAGCCGTGACGAGGGCATGCACACGGACTTCGCCTGCCTCA 15507 Query 61643 TGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTC 61702 || || || | | ||||| || | | ||||| || ||| ||||| || | Sbjct 15506 TG-TACTC-----CAAGCTGGTCAACAAGCTGCCGGAGAGCCGCGTGCACGAGATCGTGC 15453 Query 61703 GTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCG 61762 |||| || || ||||| || || || || ||| | | || ||| ||||||| Sbjct 15452 GTGACGCTGTGGTGATCGAGCACGAGTTCGTGCGCGACTCGCTCCCTGTCGAGCTCATCG 15393 Query 61763 GCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG 61822 ||||||| | || || |||| ||||| ||||| || || || ||||||||| | | Sbjct 15392 GCATGAACTCGGGGCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTCTACT 15333 Query 61823 ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTT 61882 |||| || |||||| || || ||||| || || | ||||||||||| | Sbjct 15332 CGCTGGGAGTGTCCAAGATCTACAACGTCAAGAACCCGTTCGACTGGATGGACATGATCT 15273 Query 61883 CGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| | |||||||| || || |||||||| ||||| ||||| || Sbjct 15272 CGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 15227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397550067322640