Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015-
10-14] 3,689 sequences; 37,238,500 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq1455 248 4e-63
>seq1455
Length=10490
Score = 248 bits (274), Expect = 4e-63
Identities = 242/316 (77%), Gaps = 38/316 (12%)
Strand=Plus/Plus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463
|| ||||||||| |||||||||||||||||||||||| | ||| |||||| |||||| |
Sbjct 3072 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTGTTAGGGTGTGGA 3131
Query 464 AACCCGTGCGCGTAATGAAAGTGAACGG----------------AGGTGGGAACCCGTGA 507
||||| ||||| |||||||||||| || |||| |||| | ||
Sbjct 3132 AACCCCAGCGCGAAATGAAAGTGAAGGGCAGCGCAAGTTGTCTGAGGTAGGAAACGTTGT 3191
Query 508 GGGT----------------GCACCATCGACCGATCCTGATGTCTTCG----GATGGATT 547
||| |||| ||||||||||| ||| ||||| || ||||
Sbjct 3192 GGGCTTCGGTCTGCGGCGTGGCACTATCGACCGATCATGAAC-CTTCGTGGTGAAAGATT 3250
Query 548 TGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607
||||| ||||| | |||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 3251 TGAGTTTGAGCACATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAA 3310
Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667
||||| ||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||
Sbjct 3311 GCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAAC 3370
Query 668 TTGGGTATAGGGGCGA 683
||||||||||||||||
Sbjct 3371 TTGGGTATAGGGGCGA 3386
Score = 181 bits (200), Expect = 4e-43
Identities = 136/160 (85%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||||||||||||||||| | || | || |||||||| | |||||||||||||
Sbjct 2525 GAGTCGCGTTGTTTGGGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 2584
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| ||
Sbjct 2585 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 2644
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
||||||||||| || || ||||| || |||||||||| ||
Sbjct 2645 AGAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAACCG 2684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079920870950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |