Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq139 109 1e-21 >seq139 Length=36859 Score = 109 bits (120), Expect = 1e-21 Identities = 232/342 (68%), Gaps = 12/342 (4%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGT 60 ||| | || || ||| |||||||| ||| ||||||||||||||||||||||| || Sbjct 5356 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGA 5414 Query 61 GCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGT 120 || ||| ||| ||||||| | | ||||||||| || | ||| |||| | |||| | Sbjct 5415 GCGAGCATTATTCGGAATGATTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAGT----T 5470 Query 121 GTGAAATCCCCGG----GCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGT 176 | ||| | ||| ||| | | | || |||| |||||||| | Sbjct 5471 GAAAAAAACAAATTAAAGCTCAACTTTATATATTTTTTCAAAACTGATAAACTAGAGTAT 5530 Query 177 GTC-AGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACA 235 ||||| ||||||| | || || | |||| ||| |||| | ||||| | Sbjct 5531 AAATAGAGGATAATGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAAGA 5590 Query 236 CCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAG 295 | |||||||||||| ||||| | |||||| || | |||||||| |||| || Sbjct 5591 TCTATGGCGAAGGCAATTATCTGGGTATATACTGACACTGAGAAACGAAAGCTTGGGTAG 5650 Query 296 CAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 | ||| ||||||||||||| ||||||||| || |||||||| Sbjct 5651 CGAACGGGATTAGATACCCCGGTAGTCCATGCTGTAAACGAT 5692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289552426656