Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq139 111 2e-22 >seq139 Length=36859 Score = 111 bits (122), Expect = 2e-22 Identities = 175/247 (71%), Gaps = 8/247 (3%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||||| ||||| ||||||||||| ||||| || |||||||| ||||| | || ||| Sbjct 1965 TTATC-TTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGA 1908 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||| ||||||| ||||||||||| ||| ||||| | || ||| | | | || Sbjct 1907 GTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCTACTT-ATTTAAA 1849 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 | | | | || | || || |||||||||||| | ||||||||||| | Sbjct 1848 AATTTAAATAAATAG-----GTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGT 1794 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||| | | ||||| | | | ||||||| | ||| |||| ||||||||||||||| Sbjct 1793 TCCTTCAATATAGTTCTCTCATTCACCTTAGTCTACTCGACCTATCCACCTGTGTCGGTT 1734 Query 242 TACGGTA 248 || |||| Sbjct 1733 TAGGGTA 1727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694375184097