Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq139 244 3e-62 >seq139 Length=36859 Score = 244 bits (270), Expect = 3e-62 Identities = 356/499 (71%), Gaps = 37/499 (7%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 5762 CGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 5821 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||| ||||||||||||| ||||| || | | | | | Sbjct 5822 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG-------CTAA----TTTTTATA 5870 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 || | ||| | | | ||||| | ||||||| ||||||||||||||| Sbjct 5871 TAAAATTTTATAT--------AAAAA---ACAGGCGTTGCATGGCTGTCGTCAGCTCGTG 5919 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCA--TC 244 | |||| ||||| |||||| ||| |||||||||||||| || ||| |||| | | Sbjct 5920 TTGTGAAATGTTTGGTTAAATCCTTTAACGAGCGCAACCCCTATCGTTATTTGCTAATTT 5979 Query 245 ATTAAGTTGG-------GCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG 297 ||||| | ||||||| | | ||| | |||||||||| Sbjct 5980 ATTAAAAACAAATAAAAGTACTCTAATGAAAATATTAATGATAGGTTAATGGAAGGTGGG 6039 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 || |||||||| || ||||| ||||||||| |||||||||||||||||||||||| | || Sbjct 6040 GATGACGTCAAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAATG-ATAA 6098 Query 358 T-ACAAAGGGCAGCGAAACCGCGA---GGTCAAGCAAATCCCATAAAGTTGTTCTCAGTT 413 | |||| | | ||| | | | | | |||||||| ||| || | || |||| Sbjct 6099 TCACAATGAGAAGCAATAATAATAAAAGTTGGAGCAAATCTTTAAAAATTAT-CTTAGTT 6157 Query 414 CGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC 473 |||||| | |||||||||| | ||||||| |||||||||||||||||| ||| |||| Sbjct 6158 CGGATTAAGGGCTGCAACTCGCCCTTATGAAGTTGGAATCGCTAGTAATCGCAGAACAGC 6217 Query 474 ATGCTACGGTGAATACGTT 492 ||||| ||||||||| ||| Sbjct 6218 ATGCTGCGGTGAATATGTT 6236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503944517440