Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq139 176 2e-41 >seq139 Length=36859 Score = 176 bits (194), Expect = 2e-41 Identities = 332/490 (68%), Gaps = 30/490 (6%) Strand=Plus/Minus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||||| | |||||||||| ||| ||||| | |||||||||| |||||||| |||| Sbjct 2387 ACCTTTGTACACCTCCGTTACTCTTTAGGAGGTGA-CCGCCCCAGTCAAACTACCAACCA 2329 Query 136 GGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTGGT 195 || |||| | | | || |||| ||| | | | |||||||| Sbjct 2328 TACAATGTCTATTAAAAAAAAAATA--------TTAGTTATTTATTTTAATAAGAGTGGT 2277 Query 196 ATTTCAACAACGACTCCACAACC-ACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCT 254 ||||||| | | |||| |||||||| | | | | | |||| ||| || Sbjct 2276 ATTTCAAGGATATTTAAACAATTTACTAGCGTAAAGGTCTAAAAAATTACCACTTATGCT 2217 Query 255 ACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGT 313 ||||| | | ||| ||||| ||| | |||| ||||| | |||||||||| ||| Sbjct 2216 ACACATATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCACGGGGTCTTTCCGT 2157 Query 314 CCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAG 373 | | ||| ||||||| || || | ||| ||||| | | || | | ||| Sbjct 2156 CTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAG 2097 Query 374 ACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCG 433 ||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 2096 ACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCG 2037 Query 434 CTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCA 493 ||||||||||| || | |||||| ||||||||||||||| |||| ||| Sbjct 2036 CTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTCCATT---------- 1987 Query 494 CACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTC 553 | || || || |||| || | |||||||||||||||||| ||||| | Sbjct 1986 ---------TAATGCGCAAACATCTCCTTTTTATCTTCCAGCACCGGGCAGGTGTCAGAC 1936 Query 554 CGTATACCTC 563 | ||||| || Sbjct 1935 CCTATACATC 1926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702337198464