Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq666 280 1e-70 seq141 255 5e-63 >seq666 Length=16246 Score = 280 bits (310), Expect = 1e-70 Identities = 1097/1694 (65%), Gaps = 63/1694 (4%) Strand=Plus/Plus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 ||||||||||| |||||||| || ||| || ||||| ||||| || | | | || Sbjct 13711 TAGTACATGCCCGTCTTGAGTCCCTTCTTCCAGGCGTAGAAGTGCATGGACG-TGAGCTT 13769 Query 65183 GCATAAT--TCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGAC 65240 || | || |||| ||||| | || || || | |||||||||||| ||||| | Sbjct 13770 GC-TGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCGC 13828 Query 65241 CACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT-ATCTCCCAGACGGTCTTGTAC 65299 |||| || || | || ||| | | ||| || | |||||||| || ||||||||| Sbjct 13829 CACGGTCGGCCGACAGGTCCAGCACT-GACTTCTGCTTGATCTCCCACACCGTCTTGTAC 13887 Query 65300 AGGCGACGT-ACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTGCAA 65357 | | | || | || || ||| | | ||| || ||||||| | ||| || Sbjct 13888 TT-CTCCTTGACGTTGTCCGGGATGGCCTTCACCTTCTGCACGGAACCACCGTCGTTCAG 13946 Query 65358 TAATGCGATTACGCA-TCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAG 65416 ||| |||| || | | | | | ||| | ||||| ||||| || | | | || | Sbjct 13947 -AATCTGATTGCGAACTTCAGGC-GTCCAGATGCCCAACTCGATCAGCTCCTTCATCAGG 14004 Query 65417 TGACGATTGATGAC--TTG-GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGAC 65473 | || ||| | || | | ||||||||| | || ||||||||| || ||||||||| Sbjct 14005 T-AC--TTGTTAACGATCGTGAACTCGCCAGCAAGCACACGACGGTTGTACATGTTGGAC 14061 Query 65474 GTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATG 65533 ||| ||| || | || || ||||||| | || || |||||||| || || |||||| Sbjct 14062 GTGTAGGGCTCGATAGACTCGTTGTTGCCCAAGATCTGAGCAGTAGAAGCCGTCGGCATG 14121 Query 65534 GGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCC 65593 || || |||| || ||||| || | |||| | | | || | || | || Sbjct 14122 GGGGCCACCAGCAGCGAGTTGCGAAGACCGTGCTTGATCACATTCTCCTTCAGCGCAGCC 14181 Query 65594 CAGTTCCACAT--CGGTTTATCGTC-GACATCCACGGGCCACATATCCTGTTGCAGGGTT 65650 || | ||| | ||| | | |||| || ||||| || || | Sbjct 14182 CAATCCCAAAGTCCGGACGAAGGAGTGACACCC------CACATGTCGAACTGGAAAACA 14235 Query 65651 CCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGA 65710 || | |||||||| || || ||||| | ||||| ||| ||||||||||| | Sbjct 14236 CCCTTGCTGGCCGGCGAGCCCTGGAAAGTCTCGTAGGGGCCCAACTCCTTGGCAATCTC- 14294 Query 65711 CAGCTG-GTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACG 65769 || | ||||| | | || | || || |||||||| ||| || | ||||| Sbjct 14295 CATCGACGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTCAACTCACG 14354 Query 65770 TGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAA 65828 ||||| |||||||| ||| | || ||| |||| || | || ||||||||||||| Sbjct 14355 TGCCTGCTCGCTCTCAAACG-CGTAGTTCATAAGGATGAACGCATCAGCCAGACCTTGAA 14413 Query 65829 CTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGT 65888 | |||||||| | |||||| || |||| || || | |||||| || ||||||| Sbjct 14414 CACCAATACCCACGGGACGGTGGCGCATGTTCGACTTGCGCGCCTCTACGACCGGGTAGT 14473 Query 65889 AATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCG--CAA 65946 | |||| ||||| | |||| ||||| |||||||| | | ||| || ||| Sbjct 14474 AGTTGACGTCGATCACCTTGTTCAGGTTGCGCGTCACCACCTTG--GTTACTTCATACAA 14531 Query 65947 TTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAG 66006 || | | ||| | || ||| | |||||||| | || || Sbjct 14532 CCTTTTGTA--------GTTGAACACA----------CCGTCCTCCACAAACATCGGCAG 14573 Query 66007 GGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTC 66066 || | || || | ||||| ||||| | ||| ||||||| || ||||| | | ||| Sbjct 14574 TGCCACCGACGCCAAATTGCACACAGCCACCTCATCAGGAGAAGTGTACTCCATCACTTC 14633 Query 66067 GGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCA 66126 ||||| || ||| |||| || |||||||| || || || || |||||| || Sbjct 14634 ACAGCACAAGTTGCTGGAGCGGATCGTGCCCAAGTTTTGCTGGTTCGACTTGCGGTTAGC 14693 Query 66127 TGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTG 66186 ||| |||||||||| |||| | ||| || ||||||| || | |||| |||||| Sbjct 14694 TGCGTCCTTGTACAGCATGAATGGAACACCCGTCTCAATCTGCGCGTCAAGGATGGCAAA 14753 Query 66187 CCAAAGAGCGCGTGCCTTCACCGTA---CGTAC-CGCCCTACCTTTGCGTTCGTAATGTT 66242 ||| || |||| || | ||| || | || || |||| ||||| | | Sbjct 14754 CCACAGTTGCTGTGCATTGATCGTCTTGCGAGCACGTCCCTCCTTC----TCGTACTTCT 14809 Query 66243 CGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGAC 66302 ||||||| || || |||||||| ||| | || | ||| | | || | Sbjct 14810 CGTAGAGCGTCTCAAACTCGTCACCCCAGCACTCGTAGAGTCCAGGAGCTTCATTGGGGC 14869 Query 66303 ACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGA 66362 | | || ||| | |||| ||| ||||| ||| || ||||| || | ||| | Sbjct 14870 AGAACAAACTCCACTTGCCATTGGCTTCCACACGCTTCATGAACAGATCGGGGACCCAAA 14929 Query 66363 GGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGA 66422 |||||||||| | ||||| || || ||| ||| | ||||| || ||||||||||| | Sbjct 14930 GGGCGTAGAACAAGTCGCGCGCCCGATGCAACTCGTTACCGTGGTTCTTGCGCAAGTCCA 14989 Query 66423 GGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTT 66482 ||||||||| | || || ||||| || |||||||| || ||||| || ||| | |||| Sbjct 14990 AGAACTCAAACACATCTGCGTGCCAAGGCTCCAGGTAAATAGCGAAAGACCCCTTGCGTT 15049 Query 66483 TGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGA 66542 | || || || ||||| ||||||||||| || ||| || || |||||||| || | || Sbjct 15050 TACCTCCGCCCTGGTCCACGTAGCGAGCAGTATCGTTAAACACCCGCAACATGGGGATGA 15109 Query 66543 GCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGA 66601 || || || ||| |||||||| ||| | | | | || || || || | ||| Sbjct 15110 TGCCATTGGACGAGCCGTTGGTGCC-TCGGATGTAGCTGTTGGTGGCACGGATGTTGTGC 15168 Query 66602 ACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGG 66661 | | | | ||||| || || ||| ||| |||||| ||||| | || ||| | Sbjct 15169 ATACTAATGCCAATTCCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTCAGTGTGTCG 15228 Query 66662 AATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGT 66721 | ||||| ||||| ||||| ||| || | ||| | | |||| || | |||||| Sbjct 15229 TAAATGCCCTCAATCGAGTCGTCCTGCATAGCCAGCAAGAAGCACGAGGACAATTGGGGA 15288 Query 66722 TTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATG 66781 || ||| | || |||||| ||||| || |||||||| ||| | | | |||||| Sbjct 15289 CGTGGCGTGCCAGCGTTGAAGAGCGTGGGCGTGGCGTGCGTGAAGAACTTCTGGGACATG 15348 Query 66782 TAATTGTACGTCTC 66795 | ||||||||| Sbjct 15349 AGCTCGTACGTCTC 15362 >seq141 Length=36708 Score = 255 bits (282), Expect = 5e-63 Identities = 596/886 (67%), Gaps = 25/886 (3%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| | |||||||| || | | || | |||| |||||||| ||||| || Sbjct 15800 CGCTTCGTGCTCTTCCCCATTCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCCGAG 15741 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTT-GTCCAAAGACATGAATGACTGGGAGCG 61172 |||||||||||||||| |||||| | ||| | || || ||| | || ||||||| | Sbjct 15740 GCTTCCTTCTGGACGGCCGAGGAGCTGGATCTCGTGCAC-GACCTCAAGGACTGGGTGAA 15682 Query 61173 TTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGA 61232 | || | || | || ||||| || || ||| |||| |||||||| || || Sbjct 15681 CCTCACGGACAACGAGCGCCACTTCATCAAGCACGTGCTGGCCTTCTTTGCTGCCAGTGA 15622 Query 61233 CGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGG 61288 ||||| ||||| ||||| || || |||| ||| | |||||||||||| | | Sbjct 15621 TGGTATAGTCAACGAGAACTTGGCCAT--GAAC--TTCAGCAACGAGGTGCAAGTGCCTG 15566 Query 61289 AGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACA 61348 |||| || || ||||||||||||||||| ||||| ||||| ||||||||||| ||||| Sbjct 15565 AGGCTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACT 15506 Query 61349 GTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA--CGATTGTTCAATGC 61406 | || || || |||||||||| ||| | || | || | || | ||| Sbjct 15505 CGCTGCTTATTGACACGTACATCAAGGACATTGTCGA--GAAAACCCACCTGCTGCGTGC 15448 Query 61407 CATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACCA 61465 ||| ||||| || ||| || || |||||| | ||||| |||| ||| | ||| Sbjct 15447 CATTGAGACTATCCCGTGTGTCCAGAAGAAAGCCAACTGGGCGCTCAAGTGGTGCGACCC 15388 Query 61466 GTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525 | | | | | | ||||| ||||||| ||||| | || |||||| | || | Sbjct 15387 GCGC-GTGTCGTCCTACCCGGAACGGCTGCTGGCCTTTGCTGCAGTGGAGGGTATCTTCT 15329 Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585 || || || || | | ||||| ||| | ||||| ||||| || ||||| ||||| | Sbjct 15328 TCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTAA 15269 Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG-CTG--TTT 61642 |||| || ||| | || || |||||||||||||| || || | ||| | Sbjct 15268 GCTTCTCGAACGAGCTCATCAGCCGTGACGAGGGCATGCACACGGACTTCGCCTGCCTCA 15209 Query 61643 TGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTC 61702 || || || | | ||||| || | | ||||| || ||| ||||| || | Sbjct 15208 TG-TACTC-----CAAGCTGGTCAACAAGCTGCCGGAGAGCCGCGTGCACGAGATCGTGC 15155 Query 61703 GTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCG 61762 |||| || || ||||| || || || || ||| | | || ||| ||||||| Sbjct 15154 GTGACGCTGTGGTGATCGAGCACGAGTTCGTGCGCGACTCGCTCCCTGTCGAGCTCATCG 15095 Query 61763 GCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG 61822 ||||||| | || || |||| ||||| ||||| || || || ||||||||| | | Sbjct 15094 GCATGAACTCGGGGCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTCTACT 15035 Query 61823 ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTT 61882 |||| || |||||| || || ||||| || || | ||||||||||| | Sbjct 15034 CGCTGGGAGTGTCCAAGATCTACAACGTCAAGAACCCGTTCGACTGGATGGACATGATCT 14975 Query 61883 CGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| | |||||||| || || |||||||| ||||| ||||| || Sbjct 14974 CGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 14929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397550125466960