Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq15193 205 4e-50 seq15168 181 4e-43 seq14928 91.5 6e-16 >seq15193 Length=593 Score = 205 bits (226), Expect = 4e-50 Identities = 152/176 (86%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 512 GCACCATCGACCGATCCTGATGTCTTCG----GATGGATTTGAGTAAGAGCATAGCTGTT 567 |||| ||||||||||| ||| ||||| || ||||||||| ||||| | |||| Sbjct 102 GCACTATCGACCGATCATGAAC-CTTCGTGGTGAAAGATTTGAGTTTGAGCACATATGTT 160 Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 || ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 161 GGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGGTGG 220 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||||| |||| ||||| |||||||||||||||||||| |||||||||||||||| Sbjct 221 AAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTGGGTATAGGGGCGA 276 >seq15168 Length=1709 Score = 181 bits (200), Expect = 4e-43 Identities = 136/160 (85%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || | || |||||||| | ||||||||||||| Sbjct 894 GAGTCGCGTTGTTTGGGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 953 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 954 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 1013 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| || |||||||||| || Sbjct 1014 AGAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAACCG 1053 Score = 174 bits (192), Expect = 7e-41 Identities = 200/270 (74%), Gaps = 38/270 (14%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| |||||||||||||||||||||||| | ||| |||||| |||||| | Sbjct 1441 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTGTTAGGGTGTGGA 1500 Query 464 AACCCGTGCGCGTAATGAAAGTGAACGG----------------AGGTGGGAAC--CCGT 505 ||||| ||||| ||||||||| || || |||| |||| | || Sbjct 1501 AACCCCAGCGCGAAATGAAAGTAAAGGGCAACGTAAGTTGTCTGAGGTAGGAAATGCTGT 1560 Query 506 GAG-----------GGTG---CACCATCGACCGATCCTGATGTCTTCG----GATGGATT 547 | | |||| ||| ||||||||||| ||| ||||| || |||| Sbjct 1561 GGGCTTCGGTCTGCGGTGTGGCACTATCGACCGATCATGAAC-CTTCGTGGTGAAAGATT 1619 Query 548 TGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||||| ||||| | |||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 1620 TGAGTTTGAGCACATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAA 1679 Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 ||||| ||||||||||||||| ||||| || Sbjct 1680 GCCAGGGGAAACTCTGGTGGAAGCTCGTAG 1709 >seq14928 Length=2953 Score = 91.5 bits (100), Expect = 6e-16 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 80 AATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAA 139 |||| | |||||||||||||||||| ||||||||||||| ||||||| |||| ||| Sbjct 533 AATTCCATCTAAAGCTAAATATTGGTGCGAGACCGATAGCGAACAAGTACTGTGAGGGAA 592 Query 140 AGATGAAAAGCACTTTGGAAAGA 162 |||||||||| | |||| ||||| Sbjct 593 AGATGAAAAGAAATTTGAAAAGA 615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079666087850