Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq15384 107 5e-21 seq15385 89.7 1e-15 seq15253 89.7 1e-15 seq15245 89.7 1e-15 seq15383 82.4 2e-13 >seq15384 Length=1126 Score = 107 bits (118), Expect = 5e-21 Identities = 231/340 (68%), Gaps = 8/340 (2%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGT 60 ||| | || || ||| |||||||| ||| ||||||||||||||||||||||| || Sbjct 46 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGA 104 Query 61 GCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGAC--AG 118 || ||| ||| ||||||| | | ||||||||| || | ||| |||| | |||| | Sbjct 105 GCGAGCATTATTCGGAATGATTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAGTTGAAA 164 Query 119 GTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGT 178 | |||| | || ||| | | | || |||| ||| |||| | Sbjct 165 GAAACAAATTAAAG--CTCAACTTTATATATTTTTTCAAAACTGATAAACTGGAGTATAA 222 Query 179 C-AGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACC 237 ||||| ||||||| | || || | |||| ||| |||| | ||||| | | Sbjct 223 ATAGAGGATAATGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAAGATC 282 Query 238 AATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCA 297 |||||||||||| ||||| | |||||| || | |||||||| |||| ||| Sbjct 283 TATGGCGAAGGCAATTATCTGGGTATATACTGACACTGAGAAACGAAAGCTTGGGTAGCG 342 Query 298 AACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||| ||||||||||||| ||||||||| || |||||||| Sbjct 343 AACGGGATTAGATACCCCGGTAGTCCATGCTGTAAACGAT 382 >seq15385 Length=1235 Score = 89.7 bits (98), Expect = 1e-15 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 211 AAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGA 270 |||| ||| |||| | ||||| | | |||||||||||| ||||| | ||||| Sbjct 1188 AAATACGTTGATAATAGAAGGAAGATCTATGGCGAAGGCAATTATCTGGGTATATACTGA 1129 Query 271 CGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCT 330 | || | |||||||| |||| ||| ||| ||||||||||||| ||||||||| || | Sbjct 1128 CACTGAGAAACGAAAGCTTGGGTAGCGAACGGGATTAGATACCCCGGTAGTCCATGCTGT 1069 Query 331 AAACGAT 337 ||||||| Sbjct 1068 AAACGAT 1062 >seq15253 Length=1471 Score = 89.7 bits (98), Expect = 1e-15 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 211 AAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGA 270 |||| ||| |||| | ||||| | | |||||||||||| ||||| | ||||| Sbjct 1353 AAATACGTTGATAATAGAAGGAAGATCTATGGCGAAGGCAATTATCTGGGTATATACTGA 1294 Query 271 CGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCT 330 | || | |||||||| |||| ||| ||| ||||||||||||| ||||||||| || | Sbjct 1293 CACTGAGAAACGAAAGCTTGGGTAGCGAACGGGATTAGATACCCCGGTAGTCCATGCTGT 1234 Query 331 AAACGAT 337 ||||||| Sbjct 1233 AAACGAT 1227 >seq15245 Length=978 Score = 89.7 bits (98), Expect = 1e-15 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 211 AAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGA 270 |||| ||| |||| | ||||| | | |||||||||||| ||||| | ||||| Sbjct 893 AAATACGTTGATAATAGAAGGAAGATCTATGGCGAAGGCAATTATCTGGGTATATACTGA 834 Query 271 CGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCT 330 | || | |||||||| |||| ||| ||| ||||||||||||| ||||||||| || | Sbjct 833 CACTGAGAAACGAAAGCTTGGGTAGCGAACGGGATTAGATACCCCGGTAGTCCATGCTGT 774 Query 331 AAACGAT 337 ||||||| Sbjct 773 AAACGAT 767 >seq15383 Length=1287 Score = 82.4 bits (90), Expect = 2e-13 Identities = 88/114 (77%), Gaps = 3/114 (3%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGT 60 ||| | || || ||| |||||||| ||| ||||||||||||||||||||||| || Sbjct 1175 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGA 1233 Query 61 GCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAG 114 || ||| ||| ||||||| | | ||||||||| || | ||| |||| | |||| Sbjct 1234 GCGAGCATTATTCGGAATGATTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAG 1287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289399247968