Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq15385 237 5e-60 seq15384 237 5e-60 seq15253 237 5e-60 seq15245 237 5e-60 seq4290 78.8 3e-12 >seq15385 Length=1235 Score = 237 bits (262), Expect = 5e-60 Identities = 354/498 (71%), Gaps = 36/498 (7%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 992 CGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 933 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||| ||||||||||||| ||||| || | | | | | Sbjct 932 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG-------CTAA----TTTTTATA 884 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 || | || | | | ||||| | ||||||| ||||||||||||||| Sbjct 883 TAAAATATTATAT--------AAAAA---ACAGGCGTTGCATGGCTGTCGTCAGCTCGTG 835 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCA---- 242 | |||| ||||| |||||| ||| ||||||||||||||||| |||||||| | Sbjct 834 TTGTGAAATGTTTGGTTAAATCCTTTAACGAGCGCAACCCTTATTGTTAGTTGCTAATTT 775 Query 243 --TCATTAAGTTGG--GCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 298 | | || | | ||||||| | ||| | ||||||||||| Sbjct 774 ACTAAAAAAAATAAAAGTACTCTAACAAAAAAATTAATGATAGGTTAATGGAAGGTGGGG 715 Query 299 ACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT 358 | |||||||| || ||||| ||||||||| ||||||||||||||||||||||| || ||| Sbjct 714 ATGACGTCAAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAAT-GATAAT 656 Query 359 -ACAAAGGGCAGCGAAACCG---CGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTC 414 |||| | | || | | | || | ||||||| | |||| | ||| ||||| Sbjct 655 CACAATGAGAGGCAATAATGATAAAAGTTGGAGCAAAT-CTTTAAAAATTATCTTAGTTC 597 Query 415 GGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCA 474 ||||| | ||| |||||| | ||||||| |||||||||||||||||| ||| ||||| Sbjct 596 GGATTAAGGGCTGAAACTCGCCCTTATGAAGTTGGAATCGCTAGTAATCGCAGAACAGCA 537 Query 475 TGCTACGGTGAATACGTT 492 |||| ||||||||| ||| Sbjct 536 TGCTGCGGTGAATATGTT 519 >seq15384 Length=1126 Score = 237 bits (262), Expect = 5e-60 Identities = 354/498 (71%), Gaps = 36/498 (7%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 452 CGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 511 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||| ||||||||||||| ||||| || | | | | | Sbjct 512 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG-------CTAA----TTTTTATA 560 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 || | || | | | ||||| | ||||||| ||||||||||||||| Sbjct 561 TAAAATATTATAT--------AAAAA---ACAGGCGTTGCATGGCTGTCGTCAGCTCGTG 609 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCA---- 242 | |||| ||||| |||||| ||| ||||||||||||||||| |||||||| | Sbjct 610 TTGTGAAATGTTTGGTTAAATCCTTTAACGAGCGCAACCCTTATTGTTAGTTGCTAATTT 669 Query 243 --TCATTAAGTTGG--GCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 298 | | || | | ||||||| | ||| | ||||||||||| Sbjct 670 ACTAAAAAAAATAAAAGTACTCTAACAAAAAAATTAATGATAGGTTAATGGAAGGTGGGG 729 Query 299 ACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT 358 | |||||||| || ||||| ||||||||| ||||||||||||||||||||||| || ||| Sbjct 730 ATGACGTCAAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAAT-GATAAT 788 Query 359 -ACAAAGGGCAGCGAAACCG---CGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTC 414 |||| | | || | | | || | ||||||| | |||| | ||| ||||| Sbjct 789 CACAATGAGAGGCAATAATGATAAAAGTTGGAGCAAAT-CTTTAAAAATTATCTTAGTTC 847 Query 415 GGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCA 474 ||||| | ||| |||||| | ||||||| |||||||||||||||||| ||| ||||| Sbjct 848 GGATTAAGGGCTGAAACTCGCCCTTATGAAGTTGGAATCGCTAGTAATCGCAGAACAGCA 907 Query 475 TGCTACGGTGAATACGTT 492 |||| ||||||||| ||| Sbjct 908 TGCTGCGGTGAATATGTT 925 >seq15253 Length=1471 Score = 237 bits (262), Expect = 5e-60 Identities = 354/498 (71%), Gaps = 36/498 (7%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 1157 CGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 1098 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||| ||||||||||||| ||||| || | | | | | Sbjct 1097 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG-------CTAA----TTTTTATA 1049 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 || | || | | | ||||| | ||||||| ||||||||||||||| Sbjct 1048 TAAAATATTATAT--------AAAAA---ACAGGCGTTGCATGGCTGTCGTCAGCTCGTG 1000 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCA---- 242 | |||| ||||| |||||| ||| ||||||||||||||||| |||||||| | Sbjct 999 TTGTGAAATGTTTGGTTAAATCCTTTAACGAGCGCAACCCTTATTGTTAGTTGCTAATTT 940 Query 243 --TCATTAAGTTGG--GCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 298 | | || | | ||||||| | ||| | ||||||||||| Sbjct 939 ACTAAAAAAAATAAAAGTACTCTAACAAAAAAATTAATGATAGGTTAATGGAAGGTGGGG 880 Query 299 ACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT 358 | |||||||| || ||||| ||||||||| ||||||||||||||||||||||| || ||| Sbjct 879 ATGACGTCAAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAAT-GATAAT 821 Query 359 -ACAAAGGGCAGCGAAACCG---CGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTC 414 |||| | | || | | | || | ||||||| | |||| | ||| ||||| Sbjct 820 CACAATGAGAGGCAATAATGATAAAAGTTGGAGCAAAT-CTTTAAAAATTATCTTAGTTC 762 Query 415 GGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCA 474 ||||| | ||| |||||| | ||||||| |||||||||||||||||| ||| ||||| Sbjct 761 GGATTAAGGGCTGAAACTCGCCCTTATGAAGTTGGAATCGCTAGTAATCGCAGAACAGCA 702 Query 475 TGCTACGGTGAATACGTT 492 |||| ||||||||| ||| Sbjct 701 TGCTGCGGTGAATATGTT 684 >seq15245 Length=978 Score = 237 bits (262), Expect = 5e-60 Identities = 354/498 (71%), Gaps = 36/498 (7%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 697 CGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 638 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||| ||||||||||||| ||||| || | | | | | Sbjct 637 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG-------CTAA----TTTTTATA 589 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 || | || | | | ||||| | ||||||| ||||||||||||||| Sbjct 588 TAAAATATTATAT--------AAAAA---ACAGGCGTTGCATGGCTGTCGTCAGCTCGTG 540 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCA---- 242 | |||| ||||| |||||| ||| ||||||||||||||||| |||||||| | Sbjct 539 TTGTGAAATGTTTGGTTAAATCCTTTAACGAGCGCAACCCTTATTGTTAGTTGCTAATTT 480 Query 243 --TCATTAAGTTGG--GCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 298 | | || | | ||||||| | ||| | ||||||||||| Sbjct 479 ACTAAAAAAAATAAAAGTACTCTAACAAAAAAATTAATGATAGGTTAATGGAAGGTGGGG 420 Query 299 ACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT 358 | |||||||| || ||||| ||||||||| ||||||||||||||||||||||| || ||| Sbjct 419 ATGACGTCAAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAAT-GATAAT 361 Query 359 -ACAAAGGGCAGCGAAACCG---CGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTC 414 |||| | | || | | | || | ||||||| | |||| | ||| ||||| Sbjct 360 CACAATGAGAGGCAATAATGATAAAAGTTGGAGCAAAT-CTTTAAAAATTATCTTAGTTC 302 Query 415 GGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCA 474 ||||| | ||| |||||| | ||||||| |||||||||||||||||| ||| ||||| Sbjct 301 GGATTAAGGGCTGAAACTCGCCCTTATGAAGTTGGAATCGCTAGTAATCGCAGAACAGCA 242 Query 475 TGCTACGGTGAATACGTT 492 |||| ||||||||| ||| Sbjct 241 TGCTGCGGTGAATATGTT 224 >seq4290 Length=4506 Score = 78.8 bits (86), Expect = 3e-12 Identities = 80/103 (78%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 |||||||| |||| | ||| |||||||| | | ||| |||||| | | ||||| Sbjct 2981 AGCAAATCTT-TAAACATTATCTTAGTTCGGAGTAAGGGCTGAAACTCGCCCTTTTGAAG 3039 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATA 488 |||||||||||||||||| ||| ||||||||| ||| ||||| Sbjct 3040 TTGGAATCGCTAGTAATCGCAGAACAGCATGCTGCGGGGAATA 3082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503765872320