Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07]
15,567 sequences; 67,815,075 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq15383 122 2e-25
seq378 122 2e-25
seq15376 113 1e-22
>seq15383
Length=1287
Score = 122 bits (134), Expect = 2e-25
Identities = 136/174 (78%), Gaps = 7/174 (4%)
Strand=Plus/Minus
Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83
|||| ||| ||| |||| |||||||| |||||||| |||||||||| |||||||||||||
Sbjct 1124 TCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCT 1066
Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143
|||| | ||| ||| |||||||||||| ||| |||| |||||||| || ||| ||
Sbjct 1065 GCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAAC 1007
Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATT--ACCTCACCAACTAGC-TAATC 194
||| || ||| | | |||||| || | || | || |||||||| | |||||
Sbjct 1006 CAGCTAAAGATAATAGGCTTGGT-AGTCTTTTAAACT-ACCAACTACCATAATC 955
>seq378
Length=3253
Score = 122 bits (134), Expect = 2e-25
Identities = 136/174 (78%), Gaps = 7/174 (4%)
Strand=Plus/Minus
Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83
|||| ||| ||| |||| |||||||| |||||||| |||||||||| |||||||||||||
Sbjct 3205 TCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCT 3147
Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143
|||| | ||| ||| |||||||||||| ||| |||| |||||||| || ||| ||
Sbjct 3146 GCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAAC 3088
Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATT--ACCTCACCAACTAGC-TAATC 194
||| || ||| | | |||||| || | || | || |||||||| | |||||
Sbjct 3087 CAGCTAAAGATAATAGGCTTGGT-AGTCTTTTAAACT-ACCAACTACCATAATC 3036
>seq15376
Length=1158
Score = 113 bits (124), Expect = 1e-22
Identities = 123/157 (78%), Gaps = 6/157 (4%)
Strand=Plus/Minus
Query 41 GCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 100
||||||||| |||||||| |||||||||| ||||||||||||||||| | ||| |
Sbjct 1153 GCTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTT 1095
Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160
|| |||||||||||| ||| |||| |||||||| || ||| ||||| || ||| | |
Sbjct 1094 GGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGG 1035
Query 161 CTTGGTGAGCCATT--ACCTCACCAACTAGC-TAATC 194
|||||| || | || | || |||||||| | |||||
Sbjct 1034 CTTGGT-AGTCTTTTAAACT-ACCAACTACCATAATC 1000
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071833121760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |