Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq15383 122 2e-25 seq378 122 2e-25 seq15376 113 1e-22 >seq15383 Length=1287 Score = 122 bits (134), Expect = 2e-25 Identities = 136/174 (78%), Gaps = 7/174 (4%) Strand=Plus/Minus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| ||| ||| |||| |||||||| |||||||| |||||||||| ||||||||||||| Sbjct 1124 TCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCT 1066 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 |||| | ||| ||| |||||||||||| ||| |||| |||||||| || ||| || Sbjct 1065 GCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAAC 1007 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATT--ACCTCACCAACTAGC-TAATC 194 ||| || ||| | | |||||| || | || | || |||||||| | ||||| Sbjct 1006 CAGCTAAAGATAATAGGCTTGGT-AGTCTTTTAAACT-ACCAACTACCATAATC 955 >seq378 Length=3253 Score = 122 bits (134), Expect = 2e-25 Identities = 136/174 (78%), Gaps = 7/174 (4%) Strand=Plus/Minus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| ||| ||| |||| |||||||| |||||||| |||||||||| ||||||||||||| Sbjct 3205 TCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCT 3147 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 |||| | ||| ||| |||||||||||| ||| |||| |||||||| || ||| || Sbjct 3146 GCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAAC 3088 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATT--ACCTCACCAACTAGC-TAATC 194 ||| || ||| | | |||||| || | || | || |||||||| | ||||| Sbjct 3087 CAGCTAAAGATAATAGGCTTGGT-AGTCTTTTAAACT-ACCAACTACCATAATC 3036 >seq15376 Length=1158 Score = 113 bits (124), Expect = 1e-22 Identities = 123/157 (78%), Gaps = 6/157 (4%) Strand=Plus/Minus Query 41 GCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 100 ||||||||| |||||||| |||||||||| ||||||||||||||||| | ||| | Sbjct 1153 GCTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTT 1095 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 || |||||||||||| ||| |||| |||||||| || ||| ||||| || ||| | | Sbjct 1094 GGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGG 1035 Query 161 CTTGGTGAGCCATT--ACCTCACCAACTAGC-TAATC 194 |||||| || | || | || |||||||| | ||||| Sbjct 1034 CTTGGT-AGTCTTTTAAACT-ACCAACTACCATAATC 1000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071833121760