Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq15561 86.0 2e-14 seq15560 86.0 2e-14 seq15510 86.0 2e-14 seq15476 86.0 2e-14 seq15453 86.0 2e-14 seq15436 86.0 2e-14 seq15407 86.0 2e-14 >seq15561 Length=1714 Score = 86.0 bits (94), Expect = 2e-14 Identities = 246/360 (68%), Gaps = 25/360 (7%) Strand=Plus/Plus Query 46 GTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCC 105 ||||| ||||||| ||| ||||| | |||||| ||| ||| || |||||| | | Sbjct 1326 GTTCGATCCTCCAAACAGTT-TTACCTATT-TTTCAATCTGTTCAT-GGTTAGATCACTC 1382 Query 106 GGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGC 165 |||| ||||||| || | |||| | | | ||| ||| | ||| |||||| Sbjct 1383 AGTTT-CGGGTCTTATTTATATA-ACTAAAAAGCTTTTTAAAACTTGATTTAT-CTACGC 1439 Query 166 CTCCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAG-TCGCTGACCCATTATACAAAAG 224 || | |||| |||||||| || | | ||||||| | |||| |||||||| |||||| Sbjct 1440 CTACTTTATTAAATTAAGCTT-GCTA-TAAAAATAAACTTGCTGGCCCATTATGCAAAAG 1497 Query 225 GTACGCAGTCACCCA---ACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGA 281 |||| | ||||| | ||||| ||| | || |||| ||| ||||||| | Sbjct 1498 GTACACTGTCACTTTTTGAAAAAGT----TCCAATTGATTGTTAACATTAAGTTTCAGAA 1553 Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTT-CGCCTTTCCCTCACGGTACTAGTTCACT 340 | ||||||| | || |||||||| | ||||||| | || ||||| ||||||| Sbjct 1554 T-TATTTCAAAC-----TCAAAAGTTCTTTTTCACCTTTCCTTTACAGTACTTGTTCACT 1607 Query 341 ATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTT 400 |||| ||| | | | || || || |||| |||| |||| ||||||| | |||| || Sbjct 1608 ATCGATCATTAATTCTTA-AAAGGTTTTGAGGGTGGTTCCCCAATATTCA-AAAAAGATT 1665 >seq15560 Length=1439 Score = 86.0 bits (94), Expect = 2e-14 Identities = 246/360 (68%), Gaps = 25/360 (7%) Strand=Plus/Minus Query 46 GTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCC 105 ||||| ||||||| ||| ||||| | |||||| ||| ||| || |||||| | | Sbjct 499 GTTCGATCCTCCAAACAGTT-TTACCTATT-TTTCAATCTGTTCAT-GGTTAGATCACTC 443 Query 106 GGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGC 165 |||| ||||||| || | |||| | | | ||| ||| | ||| |||||| Sbjct 442 AGTTT-CGGGTCTTATTTATATA-ACTAAAAAGCTTTTTAAAACTTGATTTAT-CTACGC 386 Query 166 CTCCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAG-TCGCTGACCCATTATACAAAAG 224 || | |||| |||||||| || | | ||||||| | |||| |||||||| |||||| Sbjct 385 CTACTTTATTAAATTAAGCTT-GCTA-TAAAAATAAACTTGCTGGCCCATTATGCAAAAG 328 Query 225 GTACGCAGTCACCCA---ACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGA 281 |||| | ||||| | ||||| ||| | || |||| ||| ||||||| | Sbjct 327 GTACACTGTCACTTTTTGAAAAAGT----TCCAATTGATTGTTAACATTAAGTTTCAGAA 272 Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTT-CGCCTTTCCCTCACGGTACTAGTTCACT 340 | ||||||| | || |||||||| | ||||||| | || ||||| ||||||| Sbjct 271 T-TATTTCAAAC-----TCAAAAGTTCTTTTTCACCTTTCCTTTACAGTACTTGTTCACT 218 Query 341 ATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTT 400 |||| ||| | | | || || || |||| |||| |||| ||||||| | |||| || Sbjct 217 ATCGATCATTAATTCTTA-AAAGGTTTTGAGGGTGGTTCCCCAATATTCA-AAAAAGATT 160 >seq15510 Length=1286 Score = 86.0 bits (94), Expect = 2e-14 Identities = 246/360 (68%), Gaps = 25/360 (7%) Strand=Plus/Minus Query 46 GTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCC 105 ||||| ||||||| ||| ||||| | |||||| ||| ||| || |||||| | | Sbjct 536 GTTCGATCCTCCAAACAGTT-TTACCTATT-TTTCAATCTGTTCAT-GGTTAGATCACTC 480 Query 106 GGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGC 165 |||| ||||||| || | |||| | | | ||| ||| | ||| |||||| Sbjct 479 AGTTT-CGGGTCTTATTTATATA-ACTAAAAAGCTTTTTAAAACTTGATTTAT-CTACGC 423 Query 166 CTCCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAG-TCGCTGACCCATTATACAAAAG 224 || | |||| |||||||| || | | ||||||| | |||| |||||||| |||||| Sbjct 422 CTACTTTATTAAATTAAGCTT-GCTA-TAAAAATAAACTTGCTGGCCCATTATGCAAAAG 365 Query 225 GTACGCAGTCACCCA---ACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGA 281 |||| | ||||| | ||||| ||| | || |||| ||| ||||||| | Sbjct 364 GTACACTGTCACTTTTTGAAAAAGT----TCCAATTGATTGTTAACATTAAGTTTCAGAA 309 Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTT-CGCCTTTCCCTCACGGTACTAGTTCACT 340 | ||||||| | || |||||||| | ||||||| | || ||||| ||||||| Sbjct 308 T-TATTTCAAAC-----TCAAAAGTTCTTTTTCACCTTTCCTTTACAGTACTTGTTCACT 255 Query 341 ATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTT 400 |||| ||| | | | || || || |||| |||| |||| ||||||| | |||| || Sbjct 254 ATCGATCATTAATTCTTA-AAAGGTTTTGAGGGTGGTTCCCCAATATTCA-AAAAAGATT 197 >seq15476 Length=1330 Score = 86.0 bits (94), Expect = 2e-14 Identities = 246/360 (68%), Gaps = 25/360 (7%) Strand=Plus/Minus Query 46 GTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCC 105 ||||| ||||||| ||| ||||| | |||||| ||| ||| || |||||| | | Sbjct 356 GTTCGATCCTCCAAACAGTT-TTACCTATT-TTTCAATCTGTTCAT-GGTTAGATCACTC 300 Query 106 GGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGC 165 |||| ||||||| || | |||| | | | ||| ||| | ||| |||||| Sbjct 299 AGTTT-CGGGTCTTATTTATATA-ACTAAAAAGCTTTTTAAAACTTGATTTAT-CTACGC 243 Query 166 CTCCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAG-TCGCTGACCCATTATACAAAAG 224 || | |||| |||||||| || | | ||||||| | |||| |||||||| |||||| Sbjct 242 CTACTTTATTAAATTAAGCTT-GCTA-TAAAAATAAACTTGCTGGCCCATTATGCAAAAG 185 Query 225 GTACGCAGTCACCCA---ACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGA 281 |||| | ||||| | ||||| ||| | || |||| ||| ||||||| | Sbjct 184 GTACACTGTCACTTTTTGAAAAAGT----TCCAATTGATTGTTAACATTAAGTTTCAGAA 129 Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTT-CGCCTTTCCCTCACGGTACTAGTTCACT 340 | ||||||| | || |||||||| | ||||||| | || ||||| ||||||| Sbjct 128 T-TATTTCAAAC-----TCAAAAGTTCTTTTTCACCTTTCCTTTACAGTACTTGTTCACT 75 Query 341 ATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTT 400 |||| ||| | | | || || || |||| |||| |||| ||||||| | |||| || Sbjct 74 ATCGATCATTAATTCTTA-AAAGGTTTTGAGGGTGGTTCCCCAATATTCA-AAAAAGATT 17 >seq15453 Length=1708 Score = 86.0 bits (94), Expect = 2e-14 Identities = 246/360 (68%), Gaps = 25/360 (7%) Strand=Plus/Minus Query 46 GTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCC 105 ||||| ||||||| ||| ||||| | |||||| ||| ||| || |||||| | | Sbjct 488 GTTCGATCCTCCAAACAGTT-TTACCTATT-TTTCAATCTGTTCAT-GGTTAGATCACTC 432 Query 106 GGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGC 165 |||| ||||||| || | |||| | | | ||| ||| | ||| |||||| Sbjct 431 AGTTT-CGGGTCTTATTTATATA-ACTAAAAAGCTTTTTAAAACTTGATTTAT-CTACGC 375 Query 166 CTCCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAG-TCGCTGACCCATTATACAAAAG 224 || | |||| |||||||| || | | ||||||| | |||| |||||||| |||||| Sbjct 374 CTACTTTATTAAATTAAGCTT-GCTA-TAAAAATAAACTTGCTGGCCCATTATGCAAAAG 317 Query 225 GTACGCAGTCACCCA---ACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGA 281 |||| | ||||| | ||||| ||| | || |||| ||| ||||||| | Sbjct 316 GTACACTGTCACTTTTTGAAAAAGT----TCCAATTGATTGTTAACATTAAGTTTCAGAA 261 Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTT-CGCCTTTCCCTCACGGTACTAGTTCACT 340 | ||||||| | || |||||||| | ||||||| | || ||||| ||||||| Sbjct 260 T-TATTTCAAAC-----TCAAAAGTTCTTTTTCACCTTTCCTTTACAGTACTTGTTCACT 207 Query 341 ATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTT 400 |||| ||| | | | || || || |||| |||| |||| ||||||| | |||| || Sbjct 206 ATCGATCATTAATTCTTA-AAAGGTTTTGAGGGTGGTTCCCCAATATTCA-AAAAAGATT 149 >seq15436 Length=1314 Score = 86.0 bits (94), Expect = 2e-14 Identities = 246/360 (68%), Gaps = 25/360 (7%) Strand=Plus/Minus Query 46 GTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCC 105 ||||| ||||||| ||| ||||| | |||||| ||| ||| || |||||| | | Sbjct 387 GTTCGATCCTCCAAACAGTT-TTACCTATT-TTTCAATCTGTTCAT-GGTTAGATCACTC 331 Query 106 GGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGC 165 |||| ||||||| || | |||| | | | ||| ||| | ||| |||||| Sbjct 330 AGTTT-CGGGTCTTATTTATATA-ACTAAAAAGCTTTTTAAAACTTGATTTAT-CTACGC 274 Query 166 CTCCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAG-TCGCTGACCCATTATACAAAAG 224 || | |||| |||||||| || | | ||||||| | |||| |||||||| |||||| Sbjct 273 CTACTTTATTAAATTAAGCTT-GCTA-TAAAAATAAACTTGCTGGCCCATTATGCAAAAG 216 Query 225 GTACGCAGTCACCCA---ACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGA 281 |||| | ||||| | ||||| ||| | || |||| ||| ||||||| | Sbjct 215 GTACACTGTCACTTTTTGAAAAAGT----TCCAATTGATTGTTAACATTAAGTTTCAGAA 160 Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTT-CGCCTTTCCCTCACGGTACTAGTTCACT 340 | ||||||| | || |||||||| | ||||||| | || ||||| ||||||| Sbjct 159 T-TATTTCAAAC-----TCAAAAGTTCTTTTTCACCTTTCCTTTACAGTACTTGTTCACT 106 Query 341 ATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTT 400 |||| ||| | | | || || || |||| |||| |||| ||||||| | |||| || Sbjct 105 ATCGATCATTAATTCTTA-AAAGGTTTTGAGGGTGGTTCCCCAATATTCA-AAAAAGATT 48 >seq15407 Length=1630 Score = 86.0 bits (94), Expect = 2e-14 Identities = 246/360 (68%), Gaps = 25/360 (7%) Strand=Plus/Minus Query 46 GTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCC 105 ||||| ||||||| ||| ||||| | |||||| ||| ||| || |||||| | | Sbjct 835 GTTCGATCCTCCAAACAGTT-TTACCTATT-TTTCAATCTGTTCAT-GGTTAGATCACTC 779 Query 106 GGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGC 165 |||| ||||||| || | |||| | | | ||| ||| | ||| |||||| Sbjct 778 AGTTT-CGGGTCTTATTTATATA-ACTAAAAAGCTTTTTAAAACTTGATTTAT-CTACGC 722 Query 166 CTCCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAG-TCGCTGACCCATTATACAAAAG 224 || | |||| |||||||| || | | ||||||| | |||| |||||||| |||||| Sbjct 721 CTACTTTATTAAATTAAGCTT-GCTA-TAAAAATAAACTTGCTGGCCCATTATGCAAAAG 664 Query 225 GTACGCAGTCACCCA---ACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGA 281 |||| | ||||| | ||||| ||| | || |||| ||| ||||||| | Sbjct 663 GTACACTGTCACTTTTTGAAAAAGT----TCCAATTGATTGTTAACATTAAGTTTCAGAA 608 Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTT-CGCCTTTCCCTCACGGTACTAGTTCACT 340 | ||||||| | || |||||||| | ||||||| | || ||||| ||||||| Sbjct 607 T-TATTTCAAAC-----TCAAAAGTTCTTTTTCACCTTTCCTTTACAGTACTTGTTCACT 554 Query 341 ATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTT 400 |||| ||| | | | || || || |||| |||| |||| ||||||| | |||| || Sbjct 553 ATCGATCATTAATTCTTA-AAAGGTTTTGAGGGTGGTTCCCCAATATTCA-AAAAAGATT 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241406720128