Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq15383 114 3e-23 seq378 114 3e-23 seq15376 102 2e-19 >seq15383 Length=1287 Score = 114 bits (126), Expect = 3e-23 Identities = 144/194 (74%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | ||| || ||| ||| ||| || |||| |||| |||| ||| || Sbjct 1147 CTTTACAACCTAATTAGCCGTCATCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCA 1088 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| ||||||||||||||||| | ||| ||| |||||||||||| ||| | Sbjct 1087 TTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAAT 1029 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| |||| || ||| |||||||| ||| | | || ||| | | ||| | | Sbjct 1028 GTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGGCTTGGTAGTCTTTTAAACTAC 969 Query 183 CAACTAGC-TAATC 195 |||||| | ||||| Sbjct 968 CAACTACCATAATC 955 >seq378 Length=3253 Score = 114 bits (126), Expect = 3e-23 Identities = 144/194 (74%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | ||| || ||| ||| ||| || |||| |||| |||| ||| || Sbjct 3228 CTTTACAACCTAATTAGCCGTCATCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCA 3169 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| ||||||||||||||||| | ||| ||| |||||||||||| ||| | Sbjct 3168 TTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAAT 3110 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| |||| || ||| |||||||| ||| | | || ||| | | ||| | | Sbjct 3109 GTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGGCTTGGTAGTCTTTTAAACTAC 3050 Query 183 CAACTAGC-TAATC 195 |||||| | ||||| Sbjct 3049 CAACTACCATAATC 3036 >seq15376 Length=1158 Score = 102 bits (112), Expect = 2e-19 Identities = 119/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 39 ATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAG 98 || |||| |||| |||| ||| |||||| ||| ||||||||||||||||| | || Sbjct 1156 ATTGCTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCTGCCTTTAAAAA-AG 1098 Query 99 TCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158 | ||| |||||||||||| ||| |||||||| |||| || ||| |||||||| ||| | Sbjct 1097 TTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAACCAGCTAAAGATAAT 1038 Query 159 CGCCTAGGTGGGCCATTACCCCGCCAACTAGC-TAATC 195 | || ||| | | ||| | ||||||| | ||||| Sbjct 1037 AGGCTTGGTAGTCTTTTAAACTACCAACTACCATAATC 1000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222209708992