Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq15383 233 6e-59 seq378 141 3e-31 seq15384 127 6e-27 seq15376 105 2e-20 >seq15383 Length=1287 Score = 233 bits (258), Expect = 6e-59 Identities = 258/336 (77%), Gaps = 7/336 (2%) Strand=Plus/Plus Query 167 GATTA-GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 ||||| | ||||||||| ||| | ||||||| | | ||| |||| | ||| | Sbjct 955 GATTATGGTAGTTGGTAGTTTAAAAGACTACCAAGCCTATTATCTTTAGCTGGTTTGAAA 1014 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 | ||||| |||||||||| |||||||||||| ||||||| | |||||||||||| Sbjct 1015 GAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAA-AGGCAGCAGTGG 1073 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC-C 344 ||||| ||| |||||| || ||||| |||| |||||| ||| ||||| ||||| ||| Sbjct 1074 GGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAATACCGAGTGAGTGATGACGGCTA 1133 Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCC 404 | ||| |||||||||| || | ||||| || |||||| |||||| | | |||| || Sbjct 1134 ATTAGGTTGTAAAGCTCTTTCATTAAGGAGGAAAATGACAGTACTTAAAAAAGAAGTTCC 1193 Query 405 GGCTAACTA--CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462 |||||| || |||||||||||||||||||||||| || || ||| |||| |||||| Sbjct 1194 GGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGAGCGAGCATTATTCGGAATG 1252 Query 463 ACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAG 498 | | |||||||||||| ||||||||||| ||||| Sbjct 1253 A-TTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAG 1287 >seq378 Length=3253 Score = 141 bits (156), Expect = 3e-31 Identities = 165/219 (75%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 167 GATTA-GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 ||||| | ||||||||| ||| | ||||||| | | ||| |||| | ||| | Sbjct 3036 GATTATGGTAGTTGGTAGTTTAAAAGACTACCAAGCCTATTATCTTTAGCTGGTTTGAAA 3095 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 | ||||| |||||||||| |||||||||||| ||||||| | |||||||||||| Sbjct 3096 GAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAA-AGGCAGCAGTGG 3154 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC-C 344 ||||| ||| |||||| || ||||| |||| |||||| ||| ||||| ||||| ||| Sbjct 3155 GGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAATACCGAGTGAGTGATGACGGCTA 3214 Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGAC 383 | ||| |||||||||| || | ||||| || |||||| Sbjct 3215 ATTAGGTTGTAAAGCTCTTTCATTAAGGAGGAAAATGAC 3253 >seq15384 Length=1126 Score = 127 bits (140), Expect = 6e-27 Identities = 122/153 (80%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 349 GGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCT 408 ||| |||||||||| || | |||| || |||||| |||||| | | |||| |||||| Sbjct 9 GGTTGTAAAGCTCTTTCATTAAGGGGGAAAATGACAGTACTTAAAAAAGAAGTTCCGGCT 68 Query 409 AACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 466 || ||| ||||||||||||||||||||||| || || ||| |||| |||||| | | Sbjct 69 AA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGAGCGAGCATTATTCGGAATGA-TT 126 Query 467 GGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 |||||||||||| ||||||||||| |||||| Sbjct 127 AGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAGT 159 >seq15376 Length=1158 Score = 105 bits (116), Expect = 2e-20 Identities = 119/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 167 GATTA-GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 ||||| | ||||||||| ||| | ||||||| | | ||| |||| | ||| | Sbjct 1000 GATTATGGTAGTTGGTAGTTTAAAAGACTACCAAGCCTATTATCTTTAGCTGGTTTGAAA 1059 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 | ||||| |||||||||| |||||||||||| ||||||| | |||||||||||| Sbjct 1060 GAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACT-TTTTTAAAGGCAGCAGTGG 1118 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322 ||||| ||| |||||| || ||||| |||| |||||| Sbjct 1119 GGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAA 1155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497366868608