Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq15384 176 1e-41 seq15385 120 7e-25 seq15253 120 7e-25 seq15245 120 7e-25 seq15383 100 7e-19 >seq15384 Length=1126 Score = 176 bits (194), Expect = 1e-41 Identities = 251/347 (72%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGG 58 ||||| | | |||| |||||||| ||| ||||||||||||||||||||||| || Sbjct 46 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGA 104 Query 59 GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAG 118 || ||| |||| |||||| | | |||||||||||| ||||||||||| |||||| | Sbjct 105 GCGAGCATTATTCGGAATGATTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAGTTGAAA 164 Query 119 GTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGG- 177 | | | || ||||||| | ||| |||||| || |||| | Sbjct 165 GAAACAAATTAAAGCTCAACTTTATATATTTTTTCAAAACTGATAAACTGGAGTATAAAT 224 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || | ||||||| ||| || || | | |||| ||| |||| ||| ||||| | | Sbjct 225 AGAGGATAATGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAAGATCTA 284 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTA-ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAA 296 |||||||||| | |||| | || |||||||||||| ||||||| |||| ||| | Sbjct 285 TGGCGAAGGCAATTATCTGGG-TATATACTGACACTGAGAAACGAAAGCTTGGGTAGCGA 343 Query 297 ACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTA 343 || ||||||||||||| ||||||||| || ||||||||||| | ||| Sbjct 344 ACGGGATTAGATACCCCGGTAGTCCATGCTGTAAACGATGAGTGCTA 390 >seq15385 Length=1235 Score = 120 bits (132), Expect = 7e-25 Identities = 123/158 (78%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 187 TGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGG 246 ||||||| ||| || || | | |||| ||| |||| ||| ||||| | | ||||||||| Sbjct 1210 TGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAAGATCTATGGCGAAGG 1151 Query 247 CGGCTTGCTGGACTGTA-ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTA 305 | | |||| | || |||||||||||| ||||||| |||| ||| ||| |||||| Sbjct 1150 CAATTATCTGGG-TATATACTGACACTGAGAAACGAAAGCTTGGGTAGCGAACGGGATTA 1092 Query 306 GATACCCTGGTAGTCCACGCCGTAAACGATGAATACTA 343 ||||||| ||||||||| || ||||||||||| | ||| Sbjct 1091 GATACCCCGGTAGTCCATGCTGTAAACGATGAGTGCTA 1054 >seq15253 Length=1471 Score = 120 bits (132), Expect = 7e-25 Identities = 123/158 (78%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 187 TGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGG 246 ||||||| ||| || || | | |||| ||| |||| ||| ||||| | | ||||||||| Sbjct 1375 TGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAAGATCTATGGCGAAGG 1316 Query 247 CGGCTTGCTGGACTGTA-ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTA 305 | | |||| | || |||||||||||| ||||||| |||| ||| ||| |||||| Sbjct 1315 CAATTATCTGGG-TATATACTGACACTGAGAAACGAAAGCTTGGGTAGCGAACGGGATTA 1257 Query 306 GATACCCTGGTAGTCCACGCCGTAAACGATGAATACTA 343 ||||||| ||||||||| || ||||||||||| | ||| Sbjct 1256 GATACCCCGGTAGTCCATGCTGTAAACGATGAGTGCTA 1219 >seq15245 Length=978 Score = 120 bits (132), Expect = 7e-25 Identities = 123/158 (78%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 187 TGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGG 246 ||||||| ||| || || | | |||| ||| |||| ||| ||||| | | ||||||||| Sbjct 915 TGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAAGATCTATGGCGAAGG 856 Query 247 CGGCTTGCTGGACTGTA-ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTA 305 | | |||| | || |||||||||||| ||||||| |||| ||| ||| |||||| Sbjct 855 CAATTATCTGGG-TATATACTGACACTGAGAAACGAAAGCTTGGGTAGCGAACGGGATTA 797 Query 306 GATACCCTGGTAGTCCACGCCGTAAACGATGAATACTA 343 ||||||| ||||||||| || ||||||||||| | ||| Sbjct 796 GATACCCCGGTAGTCCATGCTGTAAACGATGAGTGCTA 759 >seq15383 Length=1287 Score = 100 bits (110), Expect = 7e-19 Identities = 92/114 (81%), Gaps = 3/114 (3%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGG 58 ||||| | | |||| |||||||| ||| ||||||||||||||||||||||| || Sbjct 1175 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGA 1233 Query 59 GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAG 112 || ||| |||| |||||| | | |||||||||||| ||||||||||| ||||| Sbjct 1234 GCGAGCATTATTCGGAATGATTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAG 1287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203012697856