Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq15189 394 3e-107 seq15192 271 2e-70 seq13109 113 1e-22 seq9868 84.2 7e-14 seq14928 78.8 3e-12 seq14878 78.8 3e-12 >seq15189 Length=1190 Score = 394 bits (436), Expect = 3e-107 Identities = 357/441 (81%), Gaps = 19/441 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 || |||||||||||| | ||| | || ||||| | || ||||||||||||||||| Sbjct 758 GTTCTCATTCCAATTGCCCGACTCGAA-GAGCCAGAGCATTGTTATTTATTGTCACTACC 816 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 817 TCCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 876 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||| ||||||||||||||||||| |||||||||||||||||||||||| || ||||||| Sbjct 877 TTCTAAGGCTCCCTCTCCGGAATCAAACCCTAATTCCCCGTTACCCGTTAATGCCATGGT 936 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| |||||||||||| |||| |||||||||||||| | | || ||||| || Sbjct 937 AGGCCCATATCCTACCATCCAAAGCTGATAGGGCAGAAACTCAATCGACTTATCGC--GC 994 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGC--CCCGAAG--GGC 294 ||| ||||| || ||||||||||| ||| || | | | ||||||| || Sbjct 995 AAAAG----CGCGATCCGCACAGTTATTATGACTCAACACAATACCAGCCCGAAGACTGC 1050 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGT 349 |||| ||| ||||||||||| | ||| |||| ||| ||| ||| |||||| Sbjct 1051 ATTGG-TTTCAATCTAATAAATGCTACCCGCCCGACAAGCAGTTGGGTATTTATGCATGT 1109 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC 409 ||||||||||||||||| |||| |||||| |||||||||||||||| | || || ||||| Sbjct 1110 ATTAGCTCTAGAATTACTACGGGTATCCAAGTAGTAAGGTACTATCGAGTAGACTATAAC 1169 Query 410 TGATTTAATGAGCCATTCGCA 430 |||| |||||||||||||||| Sbjct 1170 TGATATAATGAGCCATTCGCA 1190 >seq15192 Length=854 Score = 271 bits (300), Expect = 2e-70 Identities = 262/329 (80%), Gaps = 18/329 (5%) Strand=Plus/Minus Query 187 TATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGC 246 |||||||||||| |||| |||||||||||||| | | || ||||| || ||| Sbjct 854 TATCCTACCATCCAAAGCTGATAGGGCAGAAACTCAATCGACTTATCGC--GCAAAAGC- 798 Query 247 CATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGC--CCCGAAGG--GCGTTGGTT 301 ||||| || ||||||||||| ||| || | | | ||||||| || |||||| Sbjct 797 ---GCGATCCGCACAGTTATTATGACTCAACACAATACCAGCCCGAAGACTGCATTGGTT 741 Query 302 TTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGTATTAGCT 356 | ||||||||||| | ||| |||| ||| ||| ||| ||||||||||||| Sbjct 740 TCA-ATCTAATAAATGCTACCCGCCCGACAAGCAGTTGGGTATTTATGCATGTATTAGCT 682 Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416 |||||||||| |||| |||||| |||||||||||||||| | || || ||||||||| || Sbjct 681 CTAGAATTACTACGGGTATCCAAGTAGTAAGGTACTATCGAGTAGACTATAACTGATATA 622 Query 417 ATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATGGCTTAAT 475 ||||||||||||||||||||| ||| | |||| |||||||||||||||||||||||||| Sbjct 621 ATGAGCCATTCGCAGTTTCACAGTACAAAATTGTTTATACTTAGACATGCATGGCTTAAT 562 Query 476 CTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||| ||||||||||||||| Sbjct 561 CTTTGAGACAAGCGTATGACTACTGGCAG 533 >seq13109 Length=1534 Score = 113 bits (124), Expect = 1e-22 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 96 GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155 |||||||||||||||||||||||||||| ||||||||||||| ||||| |||||| |||| Sbjct 1095 GCCTTCCTTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCAGAATCAAACCCTCATTC 1036 Query 156 CCCGTTACCCGT 167 |||||||||||| Sbjct 1035 CCCGTTACCCGT 1024 >seq9868 Length=4002 Score = 84.2 bits (92), Expect = 7e-14 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTT 451 ||| | || || ||||||||| ||||||||||||||||| ||||| ||| | |||| || Sbjct 1187 ATCGAGTAGACTATAACTGATATAATGAGCCATTCGCAG-TTCACAGTACAAAATTGTTT 1129 Query 452 ATACTTAGACATGCATGG 469 |||||||||||||||||| Sbjct 1128 ATACTTAGACATGCATGG 1111 >seq14928 Length=2953 Score = 78.8 bits (86), Expect = 3e-12 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||| ||||||||||||||||||| ||||||||||| ||| Sbjct 1469 ACTTAGACATGCATGACTTAATCTTTGAGACAAGCGTATGACTACTGACAG 1419 >seq14878 Length=9084 Score = 78.8 bits (86), Expect = 3e-12 Identities = 53/58 (91%), Gaps = 1/58 (2%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTT 100 ||||||||||||||||||||| ||||| |||||||| ||||| |||||||| |||||| Sbjct 3987 TATTTATTGTCACTACCTCCCTGTGTCAGGATTGGG-AATTTACGCGCCTGTTGCCTT 4043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510164876032