Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cactorum_20[genbank_20GCA_5F002081965.1_202017-04-07] 15,567 sequences; 67,815,075 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq5021 89.7 7e-13 >seq5021 Length=14437 Score = 89.7 bits (98), Expect = 7e-13 Identities = 253/385 (66%), Gaps = 4/385 (1%) Strand=Plus/Plus Query 162455 TCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAA 162514 ||||||||||| || || ||| | || || ||| || | || || ||| | || Sbjct 4793 TCTACCAAGCGTCTACAAGCGAGTTGTACGGTAAAGTACAAGCCACGCCACAGGATGAGG 4852 Query 162515 CCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATCA 162574 ||| ||| | ||||||| || || ||||| || || || | || || || |||| Sbjct 4853 ACACGCCATTCCATCCACGTTCACCCTATGGGGTGGCAAAGCAATTTGCCTTTTGGAGTG 4912 Query 162575 TCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACG 162634 | |||| | | ||| ||| | || | ||| || || |||||||| || |||| Sbjct 4913 TGGTAAACCATCGCGAAGCCTACGGTATGTACGCCGTTAATGGGATTCTATTTAACCACG 4972 Query 162635 AAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAA 162694 | || | || | ||| || || ||||| || || ||| ||||||| || || | Sbjct 4973 AGAGTCCTCGACGCGGACCAACCTTTGTCACTCGTAAAATCACCCGAGCCGTGGTGCGTA 5032 Query 162695 TTAGTGTGGGACTCCA-AAGTG-ATCTACAACTTGGAAACCTCAATGCCCGACGTGACTG 162752 || | | ||| || | ||||| ||| | | || ||||| ||||| || ||||| Sbjct 5033 TTCGAGCTGGAATCGACAAGTGCCTCTTC--GTAGGCAACCTTGATGCCAAGCGCGACTG 5090 Query 162753 GGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGA 162812 ||| ||||| |||||||| || |||||| ||||| ||||| || | || || Sbjct 5091 GGGCCACGCGCGCGACTACGTGGAATGCATGTGGCGTATGCTACAGCACGACACCCCCGA 5150 Query 162813 TGATTATGTGATCGCAACTGGTGAG 162837 |||| ||| | || ||||| ||| Sbjct 5151 GGATTTCGTGGTTGCCACTGGAGAG 5175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691324650682920