Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq56333 398 1e-108 seq60059 170 3e-40 seq58247 84.2 3e-14 seq55585 75.2 2e-11 >seq56333 Length=15900 Score = 398 bits (440), Expect = 1e-108 Identities = 245/256 (96%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 7198 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 7255 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7256 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 7315 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 7316 CCCGGGCCTGTCGGCCAAGGTGTGA-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 7374 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 7375 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACG 7434 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 7435 GCCATAGTCCCTCTAA 7450 >seq60059 Length=5665 Score = 170 bits (188), Expect = 3e-40 Identities = 177/227 (78%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| ||||| |||| ||| || |||| ||||||| ||||||||| |||||| | Sbjct 796 GTACAAAGGACAGGGGCGTAACCAATGCAAGCT-GATGACTTGCGCTTACTGGGAATT-C 853 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 || ||| || || | |||||||| |||||||| | ||||||| |||| |||||| Sbjct 854 CTTGTTCAAAACTGAAAATTGCAACAGTCTATCCCTAGCACGATGCGCATTCACAAGATT 913 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| ||||| ||||| | |||| ||||| |||||||||||||| ||||| Sbjct 914 -CCCAGACATGTCGATAAAGGTTGCATACTCATTGAACGCATCAGTGTAGCGCACGTGCT 972 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 | |||||||||||||||||||||||| | ||||| || ||||| Sbjct 973 ACTTAGAACATCTAAGGGCATCACAGACATTTTATTTTTTCTAACTT 1019 >seq58247 Length=33010 Score = 84.2 bits (92), Expect = 3e-14 Identities = 106/142 (75%), Gaps = 3/142 (2%) Strand=Plus/Minus Query 14 GGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACC 73 ||||||| |||| || |||| || ||| ||| |||||||||| ||||||||| |||||| Sbjct 17526 GGACGTAATCAATGCAAGCT-GACAACTTGCGTTTACTAGGAA-TTCCTCGTTCAAGACC 17469 Query 74 AACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTC 132 | || ||||| | |||||| | | | ||| | |||| | ||||| | ||||| || Sbjct 17468 GAAAAATGCAACAGTATATCCCTAGCTCCATGCGAATTCACATAATTACACAGACCTATC 17409 Query 133 GGCCAAGGTGATAGACTCGTTG 154 | |||||| | |||||||| Sbjct 17408 GATCAAGGTTGAATACTCGTTG 17387 >seq55585 Length=3015 Score = 75.2 bits (82), Expect = 2e-11 Identities = 85/110 (77%), Gaps = 3/110 (3%) Strand=Plus/Plus Query 14 GGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACC 73 ||||||| |||| || |||| || ||| ||| |||||||||| |||||| || |||||| Sbjct 1974 GGACGTAATCAATGCAAGCT-GACAACTTGCGTTTACTAGGAA-TTCCTCTTTCAAGACC 2031 Query 74 AACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACC 122 | |||||||| |||||||| | | ||||| | |||| || ||| || Sbjct 2032 GAAAATTGCAACAGTCTATCCCTAGCTCGATGCGAATTCACAAAATTGCC 2081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751473061380