Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq56333 125 4e-27 seq62117 86.0 3e-15 seq37449 86.0 3e-15 >seq56333 Length=15900 Score = 125 bits (138), Expect = 4e-27 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| ||| ||||| || |||||| | Sbjct 7727 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 7785 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 7786 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 7843 Score = 80.6 bits (88), Expect = 1e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 8218 CCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 8276 >seq62117 Length=3823 Score = 86.0 bits (94), Expect = 3e-15 Identities = 82/103 (80%), Gaps = 4/103 (4%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||||||||||||||||| || ||||| || |||| ||| | ||| | Sbjct 3163 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAAATA-AACGACT 3105 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGG 100 || ||||| ||||||||||||||| |||||||||||||| || Sbjct 3104 GCCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGG 3062 >seq37449 Length=519 Score = 86.0 bits (94), Expect = 3e-15 Identities = 82/103 (80%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||||||||||||||||| || ||||| || |||| ||| | ||| | Sbjct 391 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAAATA-AACGACT 449 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGG 100 || ||||| ||||||||||||||| |||||||||||||| || Sbjct 450 GCCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGG 492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278211213480