Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq56333 233 3e-59 seq55571 205 2e-50 seq71154 113 8e-23 seq14949 75.2 2e-11 >seq56333 Length=15900 Score = 233 bits (258), Expect = 3e-59 Identities = 203/248 (82%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 8090 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 8031 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | || | ||||| |||||| | ||| || |||||||| Sbjct 8030 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 7972 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 7971 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 7912 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 7911 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 7853 Query 311 GTTAGGGG 318 ||| |||| Sbjct 7852 GTTGGGGG 7845 >seq55571 Length=838 Score = 205 bits (226), Expect = 2e-50 Identities = 192/240 (80%), Gaps = 7/240 (3%) Strand=Plus/Plus Query 84 AAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCATGGAATAATA 139 ||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| Sbjct 593 AAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCATGGAATAATA 652 Query 140 GAATA-GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGG 198 ||| || | || | || ||||||||||||| | ||| |||||||||||||||| Sbjct 653 AGATACGGCCTTGGTGGTCGATTTTGTTGGTTTGCAC-ACCAGGGTAATGATTAATAGGG 711 Query 199 ATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACT 258 | ||| |||||| | |||| | ||||||||||||||||||||| | |||| Sbjct 712 ACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGACCGCTGAAAGATG 771 Query 259 AACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || |||||||| || ||||||||||||||||||||||| |||||||||||||||| Sbjct 772 AGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 830 Score = 77.0 bits (84), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 6/82 (7%) Strand=Plus/Plus Query 94 GTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCATGGAATAATAGAATA-GGAC 148 ||||| ||||||||| ||||||| ||||||||||||||||||||||| ||| || | Sbjct 462 GTGTT-AAAGCAGGCGTTTGCTCATTTGAATACATTAGCATGGAATAATAAGATACGGCC 520 Query 149 GTGCGGTTCTATTTTGTTGGTT 170 || | ||||||||||||||| Sbjct 521 TTGGTGGTCTATTTTGTTGGTT 542 >seq71154 Length=9931 Score = 113 bits (124), Expect = 8e-23 Identities = 129/168 (77%), Gaps = 8/168 (5%) Strand=Plus/Plus Query 84 AAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCATGGAATAATA 139 ||||| ||||||||| ||||||||| ||||||| ||||||||| |||||||||||| Sbjct 5099 AAAAAATAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTCGCATGGAATAATT 5158 Query 140 GAATAGGACGTGCG-GTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGG 198 ||| | || | | ||| |||||||||||| | ||| ||||| |||||||| | Sbjct 5159 AGATACAGCCTGGGTGGTCTTTTTTGTTGGTTTGC-GCACCAGGGTAATTATTAATAGTG 5217 Query 199 ATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 | ||| ||| | ||| |||| | | |||||||||||||||||||| Sbjct 5218 ACAGTTGGGTAT-TCA-TATTTCAGCGGCAGAGGTGAAATTCTTGGAT 5263 >seq14949 Length=1689 Score = 75.2 bits (82), Expect = 2e-11 Identities = 49/53 (92%), Gaps = 1/53 (2%) Strand=Plus/Minus Query 266 GCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||| || ||||||||||||||||||||||| |||||||||||||||| Sbjct 56 GCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914538017536