Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq56333 307 2e-81 seq60059 214 3e-53 >seq56333 Length=15900 Score = 307 bits (340), Expect = 2e-81 Identities = 224/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7341 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 7400 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | ||||||||||||||||||| ||| Sbjct 7401 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCC 7460 Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | || | | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 7461 GTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 7520 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7521 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 7580 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 7581 AAAGAGCTCTCAGTCTGTC 7599 >seq60059 Length=5665 Score = 214 bits (236), Expect = 3e-53 Identities = 195/245 (80%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||| ||||| | |||||||||||||||||||||||| | ||||| || Sbjct 954 TCAGTGTAGCGCACGTGCTACTTAGAACATCTAAGGGCATCACAGACATTTTATTTTTTC 1013 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 ||||| | |||| | || | |||| |||||| | || | | | || || || Sbjct 1014 TAACTTGCTTTGGTTTGATTATCCAAACCTCCCTCCACAAACCTA----CAAATAATGGT 1069 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 ||| ||||||||| | ||||||||||||||| || |||| ||||||||||||| Sbjct 1070 AAGCAGGGTTATTTAGCACGCGGAGGTCTCGTTCGTTAACGAAATTGACCAGACAAATCA 1129 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 ||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 1130 CTCCACCAACTTAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGATTTCAAT 1189 Query 254 CTGTC 258 ||||| Sbjct 1190 CTGTC 1194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796241669292