Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq56333 412 6e-113 seq27867 246 5e-63 seq54482 118 2e-24 seq18678 73.4 7e-11 >seq56333 Length=15900 Score = 412 bits (456), Expect = 6e-113 Identities = 268/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | || ||| ||||||||||||||||||||||||||||| Sbjct 3395 TACTAGGTTGAATTACTATTGCGACG-CGGGCATCAGTAGGGTAAAACTAACCTGTCTCA 3453 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 3454 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 3513 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3514 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 3573 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 3574 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 3633 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || |||||||||||||||||||| |||||| |||| |||||| Sbjct 3634 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 3686 >seq27867 Length=1855 Score = 246 bits (272), Expect = 5e-63 Identities = 166/186 (89%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 99 TGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAG 158 ||||||||||||| || ||| |||| ||||| ||||||||||||||||||||||||| Sbjct 186 TGAACAATCCAACAATTGGCGAGTTCTACTTCGCAATGATAGGAAGAGCCGACATCGAAG 127 Query 159 GATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 126 AATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 67 Query 219 ACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTT 278 ||||||||| |||||||||| | ||||| | | ||||||||||||||||||||| ||| Sbjct 66 ACTTTTCTGACACCTCTAGCTTAAAATTCTAAAGAACTAAAGGATCGATAGGCCACGCTT 7 Query 279 TCATGG 284 ||| || Sbjct 6 TCACGG 1 >seq54482 Length=553 Score = 118 bits (130), Expect = 2e-24 Identities = 73/78 (94%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 124 CTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAA 183 || ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 78 CTACTTCGCAATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAACGTCGCTATGGA 19 Query 184 CGCTTGGCTGCCACAAGC 201 |||||||||||||||||| Sbjct 18 CGCTTGGCTGCCACAAGC 1 >seq18678 Length=3790 Score = 73.4 bits (80), Expect = 7e-11 Identities = 42/43 (98%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 139 AGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 |||||||||||||||||||| |||||||||||||||||||||| Sbjct 2805 AGGAAGAGCCGACATCGAAGAATCAAAAAGCAACGTCGCTATG 2847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853781995392