Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= AAMG01001674.1 Length=313 Score E Sequences producing significant alignments: (Bits) Value seq14414 86.0 1e-14 seq14416 80.6 5e-13 seq14415 75.2 2e-11 >seq14414 Length=1868 Score = 86.0 bits (94), Expect = 1e-14 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 35 GACGAAGAGATTGTCCAGCGTATTGCTGGCCGTCGCGTACAAGAAGCCTCGGGCCGCGTG 94 ||||| | | | || |||| ||||||||||| ||||| || ||| |||||| Sbjct 314 GACGAGGTGCTGGTGGAGCGCATTGCTGGCCGACGCGTGCACCCGGCCAGCGGCCGCAGC 255 Query 95 TACCACACCGTCTACAATCCGCCAAAGGTTGCAGGCAAGGACGATGTGACCGGCGAAGAC 154 |||||| | | | ||||| ||||| || |||||||| ||| | || ||||| | Sbjct 254 TACCACGTCAAGTTCGCCCCGCCCAAGGTGGCCGGCAAGGATGATATCACGGGCGAGCCC 195 Query 155 CTGGTACAGCGCAAGGACGACACCGAAGAAACCGTTCGTCAC-CGCCTGTCTGTTTACCA 213 ||| | |||||||||||||||| ||| | | || ||| | | || || | | ||| Sbjct 194 CTGATCCAGCGCAAGGACGACAACGAGGCCA-CGCTCGGCTCGCGTCTCCAGGCCTTCCA 136 Query 214 TTCGCAAACCAAGCCGCTGGTGGACTTCTACCAGAAGCTGG 254 ||| ||| ||||| || | |||||||||| |||| || Sbjct 135 CAAGCAGACCCAGCCGGTGATCGACTTCTACCGCAAGCAGG 95 >seq14416 Length=591 Score = 80.6 bits (88), Expect = 5e-13 Identities = 152/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 35 GACGAAGAGATTGTCCAGCGTATTGCTGGCCGTCGCGTACAAGAAGCCTCGGGCCGCGTG 94 ||||| | | | || |||| || || ||||| ||||| || ||| |||||| Sbjct 314 GACGAGGTGTTGGTGGAGCGCATCGCGGGCCGCCGCGTGCACCCGGCCAGCGGCCGCAGC 255 Query 95 TACCACACCGTCTACAATCCGCCAAAGGTTGCAGGCAAGGACGATGTGACCGGCGAAGAC 154 |||||| | | | ||||| ||||| || |||||||||||| | || ||||| | Sbjct 254 TACCACGTCAAGTTCGCCCCGCCTAAGGTGGCCGGCAAGGACGATATCACGGGCGAGCCC 195 Query 155 CTGGTACAGCGCAAGGACGACACCGAAGAAACCGTTCGTCAC-CGCCTGTCTGTTTACCA 213 ||| | |||||||||||||||| ||| | | || ||| | | || || | | ||| Sbjct 194 CTGATCCAGCGCAAGGACGACAACGAGGCCA-CGCTCGGCTCGCGTCTCCAGGCCTTCCA 136 Query 214 TTCGCAAACCAAGCCGCTGGTGGACTTCTACCAGAAGCTGG 254 ||| ||| ||||| || | |||||||||| |||| || Sbjct 135 CAAGCAGACCCAGCCGGTGATCGACTTCTACCGCAAGCAGG 95 >seq14415 Length=518 Score = 75.2 bits (82), Expect = 2e-11 Identities = 104/143 (73%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 113 CCGCCAAAGGTTGCAGGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGCAAGGAC 172 ||||| ||||| || |||||||||||| | || ||||| |||| | |||||||||||| Sbjct 236 CCGCCCAAGGTGGCCGGCAAGGACGATATCACGGGCGAGCCCCTGATCCAGCGCAAGGAC 177 Query 173 GACACCGAAGAAACCGTTCGTCAC-CGCCTGTCTGTTTACCATTCGCAAACCAAGCCGCT 231 |||| ||| | | || ||| | | || || | | ||| ||| ||| ||||| | Sbjct 176 GACAACGAGGCCA-CGCTCGGCTCGCGTCTCCAGGCCTTCCACAAGCAGACCCAGCCGGT 118 Query 232 GGTGGACTTCTACCAGAAGCTGG 254 | | |||||||||| |||| || Sbjct 117 GATCGACTTCTACCGCAAGCAGG 95 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898549590656