Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq56333 127 2e-27 seq55571 116 4e-24 seq71154 78.8 1e-12 >seq56333 Length=15900 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 8090 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 8031 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 8030 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 7973 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 7972 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 7913 Query 190 T 190 | Sbjct 7912 T 7912 >seq55571 Length=838 Score = 116 bits (128), Expect = 4e-24 Identities = 128/168 (76%), Gaps = 7/168 (4%) Strand=Plus/Plus Query 23 AAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACCATGGAATAATA 78 ||||||||||| ||| ||||||||| ||||||| |||||||||| |||||||||||| Sbjct 593 AAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCATGGAATAATA 652 Query 79 GAATA-GGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACG 137 ||| || | || | || ||||||| ||||| | | | |||||||| |||| | Sbjct 653 AGATACGGCCTTGGTGGTCGATTTTGTTGGTTTGCACACCAGG--GTAATGATTAATAGG 710 Query 138 GATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || ||| |||||| | |||| | |||| |||||||||||||||| Sbjct 711 GACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGA 758 >seq71154 Length=9931 Score = 78.8 bits (86), Expect = 1e-12 Identities = 123/169 (73%), Gaps = 9/169 (5%) Strand=Plus/Plus Query 23 AAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACCATGGAATAATA 78 ||||| ||||| ||| ||||||||| ||||||| ||||||||| ||||||||||| Sbjct 5099 AAAAAATAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTCGCATGGAATAATT 5158 Query 79 GAATAGGACGTGCG-GTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACG 137 ||| | || | | ||| |||||| ||||| | ||| ||||| || |||| Sbjct 5159 AGATACAGCCTGGGTGGTCTTTTTTGTTGGTTTGC-GCACCAGG-GTAATTATTAATAGT 5216 Query 138 GATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || ||| ||| | ||| |||| | | || ||||||||||||||||| Sbjct 5217 GACAGTTGGGTAT-TCA-TATTTCAGCGGCAGAGGTGAAATTCTTGGAT 5263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511641233280