Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq56333 320 3e-85 seq60059 143 5e-32 seq58247 75.2 2e-11 seq55585 73.4 7e-11 >seq56333 Length=15900 Score = 320 bits (354), Expect = 3e-85 Identities = 263/316 (83%), Gaps = 13/316 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | ||| | || ||| |||||| Sbjct 7508 GAACGAGACCTCAGCCTGCTAACTAGCTACGTGGAGGCATCCCTTCACGG----CCGGCT 7453 Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | | | || | | |||||||||||||||||||||||||||||| Sbjct 7452 TCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 7393 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| Sbjct 7392 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTCA-CACC 7334 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||| Sbjct 7333 TTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 7275 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||| Sbjct 7274 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 7215 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 7214 GTCCCTGCCCTTTGTA 7199 >seq60059 Length=5665 Score = 143 bits (158), Expect = 5e-32 Identities = 174/236 (74%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 93 TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC 152 |||| || | | ||||| || ||||| | |||||||||||||||||||||||| | Sbjct 1031 TCAAACCAAAGCAAGTTAGAAAAAATAAAATGTCTGTGATGCCCTTAGATGTTCTAAGTA 972 Query 153 GCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTA 212 ||||| |||||||||||| ||| |||| ||||| || | ||||||| | Sbjct 971 GCACGTGCGCTACACTGATGCGTTCAATGAGTATGCAACCTTTATCGACATGTCTGGG-A 913 Query 213 ATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGG 272 ||||||| || ||||||| |||||||| |||||||| | | || ||| ||| Sbjct 912 ATCTTGTGAATGCGCATCGTGCTAGGGATAGACTGTTGCAATTTTCAGTTTTGAACAAGG 853 Query 273 AATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| || ||||||||| ||||||||| || ||| ||||| ||||| |||||||| Sbjct 852 AATTCCCAGTAAGCGCAAGTCATCAGCTTGCATTGGTTACGCCCCTGTCCTTTGTA 797 >seq58247 Length=33010 Score = 75.2 bits (82), Expect = 2e-11 Identities = 103/142 (73%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 177 CAACGAGT--TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGC 234 |||||||| ||| |||||| || ||||||| ||||| ||| || | | || Sbjct 17387 CAACGAGTATTCA--ACCTTGATCGATAGGTCTGTGTAATTATGTGAATTCGCATGGAGC 17444 Query 235 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 | |||||| | ||||| || | | |||| |||||||||| |||||||| ||| || Sbjct 17445 TAGGGATATACTGTTGCATTTTTCGGTCTTGAACGAGGAATTCCTAGTAAACGCAAGTTG 17504 Query 295 TCAGCACGCGTTGATTACGTCC 316 ||||| || |||||||||||| Sbjct 17505 TCAGCTTGCATTGATTACGTCC 17526 >seq55585 Length=3015 Score = 73.4 bits (80), Expect = 7e-11 Identities = 69/88 (78%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||| ||| |||||||| |||||||| | | |||| || ||||||| |||||||| ||| Sbjct 2061 TCGAGCTAGGGATAGACTGTTGCAATTTTCGGTCTTGAAAGAGGAATTCCTAGTAAACGC 2002 Query 289 GTGTCATCAGCACGCGTTGATTACGTCC 316 || ||||| || |||||||||||| Sbjct 2001 AAGTTGTCAGCTTGCATTGATTACGTCC 1974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946514871296