Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq56333 699 0.0 seq57460 127 7e-27 seq19629 105 2e-20 seq67812 80.6 9e-13 seq39150 80.6 9e-13 seq69713 75.2 4e-11 >seq56333 Length=15900 Score = 699 bits (774), Expect = 0.0 Identities = 479/533 (90%), Gaps = 8/533 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 3720 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 3779 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 3780 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCCGCCCGGATC 3839 Query 127 GGCCCGC-GAAG-GAC-CTTAACGCCAGAAAATGGTCGGTGAAGACCAGT-TCCGCTTCA 182 | ||||| |||| || ||| | | || | || | || || | |||| |||| Sbjct 3840 GACCCGCCGAAGCGAGTCTTGGGTCTAAAAGAAGGG-GTTGTTACCCCGCCTCCGATTCA 3898 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242 || ||||||||| |||| ||| ||||||||||||||||||||||| | ||||||| Sbjct 3899 CGGAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGGA---GCTCCCA 3955 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3956 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 4015 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 4016 CTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTA 4075 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4076 GACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 4135 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4136 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 4195 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 4196 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 4248 >seq57460 Length=26511 Score = 127 bits (140), Expect = 7e-27 Identities = 78/83 (94%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 ||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 3229 TTAAGAGAGTCATAGATACTCCCTCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTTTG 3288 Query 495 ACATTCAGAGCACTGGGCAGAAA 517 ||||||||||||||| |||| || Sbjct 3289 ACATTCAGAGCACTGAGCAGCAA 3311 >seq19629 Length=1000 Score = 105 bits (116), Expect = 2e-20 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 24 ATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCG 83 |||||||||||| |||| | |||||||||||||| ||||| |||||||||||||||| Sbjct 1 ATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATCATTTAACAGATGTGCCG 60 Query 84 CCCCAGCCAAACTCCCCA 101 |||||||||||||||||| Sbjct 61 CCCCAGCCAAACTCCCCA 78 >seq67812 Length=7271 Score = 80.6 bits (88), Expect = 9e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 61 GTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAAC 119 ||||| ||||||||||||||||||||||||||||||||||||||| ||||| || || Sbjct 6893 GTTATCATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGATGATGTCTTCCAC 6951 >seq39150 Length=1759 Score = 80.6 bits (88), Expect = 9e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 61 GTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAAC 119 ||||| ||||||||||||||||||||||||||||||||||||||| ||||| || || Sbjct 1108 GTTATCATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGATGATGTCTTCCAC 1166 >seq69713 Length=32408 Score = 75.2 bits (82), Expect = 4e-11 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 20 GGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGT 79 |||||||||||||||| |||| | |||||||||||||| ||||| ||||||| |||| Sbjct 30962 GGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATCATTTAACAAATGT 31021 Query 80 GCCGCCCCA 88 | ||| ||| Sbjct 31022 GTCGCTCCA 31030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634017227136