Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq9129 621 1e-175 seq17247 221 4e-55 seq52128 132 1e-28 seq54407 120 9e-25 seq62680 118 3e-24 seq70870 96.9 1e-17 >seq9129 Length=2268 Score = 621 bits (688), Expect = 1e-175 Identities = 451/513 (88%), Gaps = 13/513 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| |||| |||||| |||| |||||||||||||||||| Sbjct 105 GTACTCATTCCAATTACCAGACTCAAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 163 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 164 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 223 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| Sbjct 224 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACCACCATGGTA 283 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 284 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCA 343 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | ||||||||||||| ||| |||||| |||||||| || |||| | | || | Sbjct 344 CTAAGGCCATGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCG 401 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 402 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 461 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| ||||| || ||| |||||| |||| |||||||| Sbjct 462 AGCTCTAGAATTACTACGGTTATCCGAGTAGT-AGTTACCATCAAACAAACTATAACTGA 520 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 521 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCT 580 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 581 TAATCTTTGAGACAAGCATATGACTACTGGCAG 613 >seq17247 Length=9219 Score = 221 bits (244), Expect = 4e-55 Identities = 145/160 (91%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 57 ACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGC 116 ||||| | ||||| |||||| ||||||| |||||||||||||||||||||||| |||||| Sbjct 6775 ACCTCTCTGTGTCAGGATTGAGTAATTTACGCGCCTGCTGCCTTCCTTGGATGCGGTAGC 6834 Query 117 CGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCAT 176 ||||||| ||||||||||||||||||| |||||||||||||||||||||||| || || | Sbjct 6835 CGTTTCTAAGGCTCCCTCTCCGGAATCAAACCCTAATTCCCCGTTACCCGTTAATGCCCT 6894 Query 177 GGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 || ||||| ||||||||||||||||| |||||||||||| Sbjct 6895 GGAAGGCCCATATCCTACCATCGAAAGCTGATAGGGCAGA 6934 >seq52128 Length=25829 Score = 132 bits (146), Expect = 1e-28 Identities = 85/93 (91%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||||||||||||||||||| | ||| |||||||||||||| |||||||| |||||||| Sbjct 9493 TATTTATTGTCACTACCTCCCTGCGTCAGGATTGGGTAATTTACGCGCCTGTTGCCTTCC 9434 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT 135 |||||||||||||| |||||| |||||||| || Sbjct 9433 TTGGATGTGGTAGCAGTTTCTAAGGCTCCCCCT 9401 >seq54407 Length=4629 Score = 120 bits (132), Expect = 9e-25 Identities = 74/79 (94%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 52 TCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTG 111 |||||||||||| ||||| |||||||||||||| ||||||||||||||||||| |||||| Sbjct 915 TCACTACCTCCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTCGATGTG 974 Query 112 GTAGCCGTTTCTCAGGCTC 130 |||||||||||| |||||| Sbjct 975 GTAGCCGTTTCTAAGGCTC 993 >seq62680 Length=15717 Score = 118 bits (130), Expect = 3e-24 Identities = 71/75 (95%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||| Sbjct 14733 TATTTATTGTCACTACCTCCCTGTGTCAGGATTGGGTAATTTACGCGCCTGATGCCTTCC 14792 Query 103 TTGGATGTGGTAGCC 117 ||||||||||||||| Sbjct 14793 TTGGATGTGGTAGCC 14807 >seq70870 Length=19050 Score = 96.9 bits (106), Expect = 1e-17 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 447 TGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 17726 TGTTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 17669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509307497472