Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq485 98.7 3e-18 >seq485 Length=38979 Score = 98.7 bits (108), Expect = 3e-18 Identities = 232/344 (67%), Gaps = 16/344 (5%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGT 60 ||| | || || ||| |||||||| ||| ||||||||||||||||||||||| || Sbjct 13336 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGA 13394 Query 61 GCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGAC--AG 118 || ||| ||| ||||||| | | ||||||||| || | ||| |||| | |||| | Sbjct 13395 GCGAGCATTATTCGGAATGATTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAGTTGAAA 13454 Query 119 GTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTG----ACTGCACGACTAGAGT 174 | |||| | || ||| | | ||||| | ||| ||| |||| Sbjct 13455 GAAACAAATTAAAG--CTCAACTTTATA----CATTTTTTCAAAACTAATAAACTGGAGT 13508 Query 175 GTGTC-AGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAA 233 | ||||| ||||||| | || || | |||| ||| |||| | ||||| Sbjct 13509 ATAAATAGAGGATAATGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAA 13568 Query 234 CACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGG 293 | | |||||||||||| ||||| | |||||| || | |||||||| |||| Sbjct 13569 GATCTATGGCGAAGGCAATTATCTGGGTATATACTGACACTGAGAAACGAAAGCTTGGGT 13628 Query 294 AGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||| ||| |||||||| |||| ||||||||| || |||||||| Sbjct 13629 AGCGAACGGGATTAGAGACCCCGGTAGTCCATGCTGTAAACGAT 13672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289525499808