Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq485 253 4e-65 >seq485 Length=38979 Score = 253 bits (280), Expect = 4e-65 Identities = 274/365 (75%), Gaps = 16/365 (4%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||| ||||| |||||||| | ||||||| | | ||||| Sbjct 9599 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 9540 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 9539 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 9480 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 ||||||||||||||||||||||| || | | | | ||| | |||| ||| Sbjct 9479 GAGTTACGGCCGCCGTTTACTGGGACT---------TCCATTTAATGCGCAAACATTTCC 9429 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| |||||||||||||||||| ||||| |||||||||| | || | | ||||||| Sbjct 9428 TTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAG 9369 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGT-------CA 299 | ||| |||||| ||||||||||| |||||| | || ||| | | Sbjct 9368 AGTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCTATTTATTAAAA 9309 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAG 359 || | ||| || || |||| ||||||| |||||||||||||||||||| | |||| Sbjct 9308 TAAATAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAATATAG 9249 Query 360 TTCTC 364 ||||| Sbjct 9248 TTCTC 9244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062338625152