Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq485 250 7e-64 >seq485 Length=38979 Score = 250 bits (276), Expect = 7e-64 Identities = 356/498 (71%), Gaps = 35/498 (7%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 13742 CGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 13801 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||| ||||||||||||| ||||| || | | | | | Sbjct 13802 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG-------CTAA----TTTTTATA 13850 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 || | |||| | | | ||||| | ||||||| ||||||||||||||| Sbjct 13851 TAAAATTTTCTAT--------AAAAA---ACAGGCGTTGCATGGCTGTCGTCAGCTCGTG 13899 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCA--TC 244 | |||| ||||| |||||| ||| |||||||||||||| || |||||||| | | Sbjct 13900 TTGTGAAATGTTTGGTTAAATCCTTTAACGAGCGCAACCCCTATCGTTAGTTGCTAATTT 13959 Query 245 ATTAAG--TTGG-----GCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG 297 ||||| || | ||||||| | ||| | |||||||||| Sbjct 13960 ATTAAAAATTAATAAAAGTACTCTAACGAAAAAATTAATGATAGGTTAATGGAAGGTGGG 14019 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 || |||||||| || ||||| ||||||||| ||||||||||||||||||||||||| | Sbjct 14020 GATGACGTCAAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAATGGTAAT 14079 Query 358 TACAAAG---GGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTC 414 |||| | |||| | | || | ||||||| | |||| | ||| ||||| Sbjct 14080 CACAATGAGAGGCAATAATAATAAAAGTTGGAGCAAAT-CTTTAAAAATTATCTTAGTTC 14138 Query 415 GGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCA 474 ||||| | ||| |||||| | ||||||| |||||||||||||||||| ||| ||||| Sbjct 14139 GGATTAAGGGCTGAAACTCGCCCTTATGAAGTTGGAATCGCTAGTAATCGCAGAACAGCA 14198 Query 475 TGCTACGGTGAATACGTT 492 |||| ||||||||| ||| Sbjct 14199 TGCTGCGGTGAATATGTT 14216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503913113920