Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq485 118 2e-24 >seq485 Length=38979 Score = 118 bits (130), Expect = 2e-24 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||||||| | || |||||||||||||||||| ||||| ||||||||||||||| | Sbjct 9777 GACAGTGTATGGTTGGTAGTTTGACTGGGGCGGTCACCTCCTAAAGAGTAACGGAGGTGT 9836 Query 173 CCAAAGATACCCTCAGCTTGGATGGAA--ACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 ||||| || |||| |||||| | | || | | || || || ||||| || Sbjct 9837 ACAAAGGTAAGCTCAAATTGGATAATAGTATCAATTGTAGAGCATAATGGTAAAAGCTTG 9896 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 ||||||| | | || || | |||||||||||||||| | || ||||||| || Sbjct 9897 CTTGACTGTAAGATAGACATATCAAACAGGGACGAAAGTCGGTCATAGTGATCCGATAGT 9956 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || ||||| | |||||| ||||||||||| ||| | ||||||| Sbjct 9957 TCTTTGTGGAAAGATTATCGCTCAACGGATAAAAGGTACTCCGGGGATA 10005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982343246752