Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq485 134 5e-29 >seq485 Length=38979 Score = 134 bits (148), Expect = 5e-29 Identities = 354/532 (67%), Gaps = 20/532 (4%) Strand=Plus/Minus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTAC 115 ||||||||||| || ||| ||||| || | ||||||||| || |||||||||| Sbjct 8643 ATTCGGAGTTTCCAAGAATTCAGTAAGTTTTTACGCCCCCTAGCTCAATGAGTGCTCTAC 8584 Query 116 CTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175 | || || | | | ||| || | ||| |||||| ||| ||||||||||| | Sbjct 8583 C-CCAAAAAAAGATTTTAAATGCTCTACTTCAATAGATTTCGCGGAAAACCAGCTATCTC 8525 Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235 ||||||||| ||||||||| |||| ||||| ||||| || | ||| | || || || Sbjct 8524 TGAGTTTGATTAGCCTTTCACTCCTAACCACAAATCATCTCCATATTTTGCCACATATGT 8465 Query 236 GGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTC 295 | ||||| ||||||| || ||||| ||||| ||| ||||| ||||||||| Sbjct 8464 GAGTTCGATCCTCCAAATAGTTTTACCTATTTTTCAATCTGTTCATGGTTAGATCACTCA 8405 Query 296 GCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTA 355 | |||||||||| | | ||| | | | | | || ||| | ||| ||||| ||| Sbjct 8404 GTTTCGGGTCTTATTTTTATAACTAAAAAG-CTTTTTAAAACTTGATTTATCTACGCCTA 8346 Query 356 CCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCA 415 | | | |||| ||||| | | || ||||| || ||| |||| | ||||||| | Sbjct 8345 CTTTA-AAAAATTAAGCTCGCTATA-AAAATAAACTTGCTGGCCCATTATGCAAAAGGTA 8288 Query 416 CGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTC 475 | | || || | || |||| || ||| | |||| | || ||||| Sbjct 8287 CACTGTTACTTTTTA--TAAA---------AGTTCCAATTGATTATTAACATTAAGTTTC 8239 Query 476 AGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCG 535 | | | ||||||| | | | | | ||||||||||||| | || |||||||| | Sbjct 8238 A-GAATTATTTCA---AACTCAAAAGTTCTTTTTCACCTTTCCTTTACAGTACTTGTTCA 8183 Query 536 CTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587 |||||| ||| || | | | |||| || ||||||| || | | ||||| Sbjct 8182 CTATCGATCATTAATTA-TTTATAGGTTTTGAGGGTGGTTCCCCAATATTCA 8132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817494997248