Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq485 118 2e-24 >seq485 Length=38979 Score = 118 bits (130), Expect = 2e-24 Identities = 142/189 (75%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAG 271 ||||||| || ||| || | || |||||| | ||||| || ||| ||||| |||| Sbjct 8884 GCTTCGGTAAATTTCTTCAGTCTCGATACATTTTAGGCGCAAAAAAACTAGACCAATGAG 8825 Query 272 CTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAA 331 ||||||||| ||||| ||||||||||||||||||||| |||| |||||||| | Sbjct 8824 CTATTACGCTTTCTTTAAAGGATGGCTGCTTCCAAGCCTACCTACTGGTTGTAATCATTT 8765 Query 332 CTCCACATCCTTTCCCACTGAG-TCACCACTTAGGGGCCTTAGCTGAT-GATCTGGGCTG 389 | || |||||| |||| || | | |||| | ||||||| ||| |||||||||| Sbjct 8764 TTTTACTTCCTTTTTCACTTAGAATATTATTTAGAGACCTTAGC-GATCAATCTGGGCTG 8706 Query 390 TTTCCCTCT 398 ||||||||| Sbjct 8705 TTTCCCTCT 8697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177531970048